View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_139 (Length: 268)
Name: NF6868A_low_139
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_139 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 6 - 268
Target Start/End: Original strand, 29418832 - 29419094
Alignment:
| Q |
6 |
gtttggtgtttgacacatgttagacaaaagacacacaaaggtgtccttgcttctgagagaactcctccactaagaatttatatcaatgaattgtaattca |
105 |
Q |
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| T |
29418832 |
gtttggtgtttgacacatgttagacacaagacacacaaaggtgtccttgcttctgagagaactcctccactaagaatttatatcaatgaattgtaattca |
29418931 |
T |
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| Q |
106 |
gctctagttataaatctataattcaaattcctaataaaagataactcctaagataatgatataatctacaatggccaacaccttccactaatatctgatg |
205 |
Q |
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| T |
29418932 |
gctctagttataaatctataattcaaattcctaataaaagataactcctaagataatgatataatctacaatggccaacaccttccactaatatctgatg |
29419031 |
T |
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| Q |
206 |
ttacttctactcattttttatgactttgttgatattatgttagagtaatcataacattgatga |
268 |
Q |
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| T |
29419032 |
ttacttctactcattttttatgactttgttgacatagtgttagagtaatcacaacattgatga |
29419094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 29457143 - 29457257
Alignment:
| Q |
75 |
ctaagaatttatatcaatgaattgtaattcagctctagttataaatctataattcaaattcctaataaaagataactcctaagataatgatataatctac |
174 |
Q |
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| T |
29457143 |
ctaagaattcatatcaacggattgtaattcaaatctaatcatagatctataattcaaattcttaataaaagtgaactcctaagataatgatattatctac |
29457242 |
T |
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| Q |
175 |
aatggccaacacctt |
189 |
Q |
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| T |
29457243 |
aatgaccaacacctt |
29457257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 24337582 - 24337772
Alignment:
| Q |
19 |
cacatgttagacaaaagacacacaaaggtgtccttgcttctgagagaactcctccactaagaatttatatcaatgaattgtaattcagctctagttataa |
118 |
Q |
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||||||||||||| | |||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| |||||||||||| ||| || || |
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| T |
24337582 |
cacatgttagacacgaaacacacaaaggtgtccttgcttctcagagaagtcctccactaagaattaatatcaatggattgtaattcagatctgattgtag |
24337681 |
T |
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| Q |
119 |
atctataattcaaattcctaataaaagataactcctaagataatgatataatctacaatggccaacaccttccactaatatctgatgttac |
209 |
Q |
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| T |
24337682 |
atctataattcaaattgctaattaaagataactcttaagataattatataatctacaatgagcaacaccttccattaatatctgatgttac |
24337772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 209
Target Start/End: Original strand, 24412190 - 24412365
Alignment:
| Q |
34 |
agacacacaaaggtgtccttgcttctgagagaactcctccactaagaatttatatcaatgaattgtaattcagctctagttataaatctataattcaaat |
133 |
Q |
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||||||||||| || ||||||||||| ||||| |||||||||||||| ||||||||||| |||| |||| || ||| ||||| ||||||||||||||| |
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| T |
24412190 |
agacacacaaaagtatccttgcttcttagagaggtcctccactaagaaattatatcaatggattgcaattgagatctgattatagatctataattcaaat |
24412289 |
T |
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| Q |
134 |
tcctaataaaagataactcctaagataatgatataatctacaatggccaacaccttccactaatatctgatgttac |
209 |
Q |
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| T |
24412290 |
tgctaattaaagataactcttatgataattatataatctacaatgagcaacaccttccgttaatatctgatgttac |
24412365 |
T |
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