View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_144 (Length: 266)
Name: NF6868A_low_144
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_144 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 746455 - 746201
Alignment:
| Q |
7 |
tgagatgaaaaaccggaatatattaatctctacatgaacaaccactaaaaaatggatatctagatctataacaataattaaaaattgtaaatttaatcat |
106 |
Q |
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| T |
746455 |
tgagaagaaaaaccggaatatattaatctctacatgaacaaccactaaaaaatggatatttagatctataacaataattaaaaattgtaaatttaatcat |
746356 |
T |
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| Q |
107 |
tgacaataattaaaaagagataatttagttgttattgtaagagatcaaacatctcttttctaactatagctcaagtaaaaattattgtcttaatctctac |
206 |
Q |
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| T |
746355 |
tgacaataattaaaaagagataatttagttgttattgtaagagatcaaacatctcttttctaactatagctcaagtaaaaattattgtcttaatctctac |
746256 |
T |
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| Q |
207 |
atgaatgcaccactatgatgttaatggttccgtaccacttccaagctaggttttt |
261 |
Q |
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| T |
746255 |
atgaatgcaccactatgatgttaatggttccgtaccacttccaagctaggttttt |
746201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 711078 - 710824
Alignment:
| Q |
7 |
tgagatgaaaaaccggaatatattaatctctacatgaacaaccactaaaaaatggatatctagatctataacaataattaaaaattgtaaatttaatcat |
106 |
Q |
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| T |
711078 |
tgagaagaaaaaccggaatatattaatctctacatgaacaaccactaaaaaatggatatttagatctataacaataattaaaaattgtaaatataatcat |
710979 |
T |
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| Q |
107 |
tgacaataattaaaaagagataatttagttgttattgtaagagatcaaacatctcttttctaactatagctcaagtaaaaattattgtcttaatctctac |
206 |
Q |
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| T |
710978 |
tgacaataattaaaaagagataatttagttgttattgtaagagatcaaacatctcttttctaactatagctcaagtaaaaattattgtcttaatctctac |
710879 |
T |
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| Q |
207 |
atgaatgcaccactatgatgttaatggttccgtaccacttccaagctaggttttt |
261 |
Q |
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| T |
710878 |
atgaatgcaccactatgatgttaatggttccgtaccacttccaagctaggttttt |
710824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 739331 - 739585
Alignment:
| Q |
7 |
tgagatgaaaaaccggaatatattaatctctacatgaacaaccactaaaaaatggatatctagatctataacaataattaaaaattgtaaatttaatcat |
106 |
Q |
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| T |
739331 |
tgagaagaaaaaccggaatatattaatctctacatgaacaaccactaaaaaatggatatttagatctataacaataattaaaaattgtaaatataatcat |
739430 |
T |
|
| Q |
107 |
tgacaataattaaaaagagataatttagttgttattgtaagagatcaaacatctcttttctaactatagctcaagtaaaaattattgtcttaatctctac |
206 |
Q |
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| T |
739431 |
tgacaataattaaaaagagataatttagttgttattgtaagagatcaaacatctcttttctaactatagctcaagtaaaaattattgtcttaatctctac |
739530 |
T |
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| Q |
207 |
atgaatgcaccactatgatgttaatggttccgtaccacttccaagctaggttttt |
261 |
Q |
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| T |
739531 |
atgaatgcaccactatgatgttaatggttccgtaccacttccaagctaggttttt |
739585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 36573118 - 36573180
Alignment:
| Q |
74 |
ataacaataattaaaaattgtaaatttaatcattgacaataattaaaaagagataatttagtt |
136 |
Q |
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||||||||||||||||| | |||||| ||||||||||||||| ||| |||| ||||||||| |
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| T |
36573118 |
ataacaataattaaaaagagacaatttagtcattgacaataattgaaacgagacaatttagtt |
36573180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 12050690 - 12050726
Alignment:
| Q |
96 |
aatttaatcattgacaataattaaaaagagataattt |
132 |
Q |
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| T |
12050690 |
aattttatccttgacaataattaaaaagagataattt |
12050726 |
T |
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