View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_150 (Length: 260)

Name: NF6868A_low_150
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_150
NF6868A_low_150
[»] chr1 (12 HSPs)
chr1 (108-252)||(13244107-13244251)
chr1 (25-99)||(13244454-13244528)
chr1 (22-109)||(13080788-13080875)
chr1 (108-177)||(12963575-12963644)
chr1 (115-182)||(19278827-19278894)
chr1 (21-111)||(19279089-19279179)
chr1 (20-110)||(12963797-12963887)
chr1 (20-89)||(13086287-13086356)
chr1 (45-104)||(13094604-13094663)
chr1 (45-104)||(13130033-13130092)
chr1 (173-252)||(19278730-19278809)
chr1 (55-104)||(13161736-13161785)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 108 - 252
Target Start/End: Complemental strand, 13244251 - 13244107
Alignment:
Q  108 tttccctctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttcatttcctttgtactcagttatacatttgtc 207  Q
    |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  13244251 tttccccctttcccaatctttccttcattagttcttttagcaggcaataacgagattcatctacatcttcatttcctttgtaatcagttatacatttctc 13244152  T
Q  208 caagaagtggtgaagattttcttttgctgccttgcccttcatctc 252  Q
    |||||| ||||||||||||||| | ||||||||||||||| ||||    
T  13244151 caagaattggtgaagattttctctagctgccttgcccttcttctc 13244107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 13244528 - 13244454
Alignment:
Q  25 cacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagctta 99  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  13244528 cacttgtgctgaaatgccagaggaggatatagcctcaaggtttcacatatggctccatgaaggtaaacaagctta 13244454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 13080875 - 13080788
Alignment:
Q  22 gcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttaccaagctctt 109  Q
    |||||||||||||||||||| | || |||| |||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||    
T  13080875 gcacacttgtgctgaaatgctacagaaggatatagccttaaggcttcacatatggctccatgaaggtaaactagcttatcaagctctt 13080788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 12963644 - 12963575
Alignment:
Q  108 tttccctctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttc 177  Q
    |||||| ||||||||||||||| |||||||| ||||||||||||||| || |||||||||| || |||||    
T  12963644 tttccccctttcccaatccttccttcattagatcttttagcaggcaagaatgagattcatccacgtcttc 12963575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 19278894 - 19278827
Alignment:
Q  115 ctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttcatttc 182  Q
    ||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||  | ||||||||||    
T  19278894 ctttcccaatctttccttcattagttcttttaccaggcaataatgagattcatccgcgtcttcatttc 19278827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 19279179 - 19279089
Alignment:
Q  21 tgcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttaccaagctctttc 111  Q
    |||||||||||| | |||||  | ||| ||| | |||||||||| ||||||||| ||||||||||| ||||| |||||| |||||||||||    
T  19279179 tgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcacatatagctccatgaagataaactagcttatcaagctctttc 19279089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 12963887 - 12963797
Alignment:
Q  20 ttgcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttaccaagctcttt 110  Q
    ||||||||||||| | |||||  | ||||||| | |||||||| | |||||| || ||||||||||| |||||||||||| ||||| ||||    
T  12963887 ttgcacacttgtgttcaaatggtataggaggataaagccttaaagcttcacaaatagctccatgaagataaacaagcttatcaagcccttt 12963797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 13086287 - 13086356
Alignment:
Q  20 ttgcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggta 89  Q
    |||||||||||||||||||||  | ||||||| | ||||| || | ||||||||| ||||||||||||||    
T  13086287 ttgcacacttgtgctgaaatggtacaggaggataaagcctcaatgcttcacatatagctccatgaaggta 13086356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 13094604 - 13094663
Alignment:
Q  45 aggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttaccaag 104  Q
    ||||||| | |||||||||||||||||||| |||||||| ||||| || |||||| ||||    
T  13094604 aggaggataaagccttaaggtttcacatatagctccatggaggtatactagcttatcaag 13094663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 13130033 - 13130092
Alignment:
Q  45 aggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttaccaag 104  Q
    ||||||| | |||||||||||||||||||| |||||||| ||||| || |||||| ||||    
T  13130033 aggaggataaagccttaaggtttcacatatagctccatggaggtatactagcttatcaag 13130092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 19278809 - 19278730
Alignment:
Q  173 tcttcatttcctttgtactcagttatacatttgtccaagaagtggtgaagattttcttttgctgccttgcccttcatctc 252  Q
    |||||||  |||||||| | || ||||||||||| |||||| | ||||||||||||||| ||| || |||||||| ||||    
T  19278809 tcttcatcacctttgtaataagatatacatttgttcaagaattcgtgaagattttctttagctaccgtgcccttcttctc 19278730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 13161736 - 13161785
Alignment:
Q  55 agccttaaggtttcacatatggctccatgaaggtaaacaagcttaccaag 104  Q
    |||||||||||||||||||| |||||||| ||||| || |||||| ||||    
T  13161736 agccttaaggtttcacatatagctccatggaggtatactagcttatcaag 13161785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University