View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_155 (Length: 258)
Name: NF6868A_low_155
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_155 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 27015354 - 27015604
Alignment:
| Q |
1 |
tcataccactccatatgtatatagggaaaatgcaacatttactaatttaccaaaaatacccccataagggcaaaatggtnnnnnnnnnnnnnngg-acaa |
99 |
Q |
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| T |
27015354 |
tcataccactccatatatatatagggaaaatgcaacatttactaatttaccaaaa-tacccccataagggcaaaatggtaaaaaaaaaaaaaggggacaa |
27015452 |
T |
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| Q |
100 |
gaattgtcctatatagtaagtagattcagttgtaacgttttcattttcctataacaacacttcaaagaatgtaatatttgatgggcaacagagcatgcgg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27015453 |
gaattgtcctatatagtaagtagattcagttgtaacgttttcattttcctataacaacacttcaaagaatgtaatatttgatgggcaacagagcatgcgg |
27015552 |
T |
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| Q |
200 |
tcagtctcaaataacctctgcaagtctataagagtcacatgcatattcttcga |
252 |
Q |
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| T |
27015553 |
tcagtctcaaat-acctctgcaagtctataagagtcacatgcattttcttcga |
27015604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 32574490 - 32574529
Alignment:
| Q |
39 |
ttactaatttaccaaaaatacccccataagggcaaaatggt |
79 |
Q |
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| T |
32574490 |
ttactaatttaccaaaa-tacccctataagggcaaaatggt |
32574529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 35534488 - 35534411
Alignment:
| Q |
1 |
tcataccactccatatgtatatagggaaaatgcaacatttactaatttaccaaaaatacccccataagggcaaaatggt |
79 |
Q |
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| T |
35534488 |
tcataccactccatatatatataggggaaatgcaacatttactaatttacc-aaaatacccctataaaggcaaaatggt |
35534411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 1975456 - 1975528
Alignment:
| Q |
1 |
tcataccactccatatgtatatagggaaaatgcaacatttactaatttaccaaaaatacccccataagggcaaaat |
76 |
Q |
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|||||||||||||||| |||||||| ||| ||| || ||||||||||||| |||||| ||||||||||||||||| |
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| T |
1975456 |
tcataccactccatat--atatagggcaaaggcagcaattactaatttacc-aaaataaccccataagggcaaaat |
1975528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 19962538 - 19962466
Alignment:
| Q |
1 |
tcataccactccatatgtatatagggaaaatgcaacatttactaatttaccaaaaatacccccataagggcaaaat |
76 |
Q |
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| T |
19962538 |
tcataccactccatat--atataggggaaaggcagcatttactaatttacc-aaaatacccctataagggcaaaat |
19962466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 1619773 - 1619841
Alignment:
| Q |
11 |
ccatatgtatataggga-aaatgcaacatttactaatttaccaaaaatacccccataagggcaaaatggt |
79 |
Q |
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|||||| ||||||| || ||| |||||| ||||||||||||||||| |||||| |||||||||||||||| |
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| T |
1619773 |
ccatatatatatagagagaaaggcaacaattactaatttaccaaaa-tacccctataagggcaaaatggt |
1619841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 44198129 - 44198203
Alignment:
| Q |
1 |
tcataccactccatatgtatatagggaaaatgcaacatttactaatttaccaaaaatacccccataagggcaaaat |
76 |
Q |
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|||||||||||||||| |||||| || ||| ||| |||||||||||||||| |||||||| | ||||||||||||| |
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| T |
44198129 |
tcataccactccatatatatatatgggaaaggcagcatttactaatttacc-aaaatacctctataagggcaaaat |
44198203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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