View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_160 (Length: 257)
Name: NF6868A_low_160
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_160 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 24 - 254
Target Start/End: Complemental strand, 8074568 - 8074338
Alignment:
| Q |
24 |
accaaccaagtgaagaaacttgatcaccagattttcccaccaacggaatcatgtgtattagctttgattccatagagtaaatgcagcacctagcaggaaa |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8074568 |
accaaccaagtgaagaaacttgatcaccagattttcccaccaacggaatcatgtgtattagctttgattccatagagtaaatgcagcacctagcaggaaa |
8074469 |
T |
|
| Q |
124 |
agtctcgagataatacacacaatcgctcagatgtccccatttacccggtcttctcatagcaaaatgacccttacctcctaagaacaatgctttaccaccc |
223 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
8074468 |
agtctcgagataatacacacaattgctcagatgtccccatttacccggtcttctcatagcacaatgacccttacctcctaagaacaatgctttatcaccc |
8074369 |
T |
|
| Q |
224 |
aaatcactcaccttaatccacatcattgtat |
254 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
8074368 |
aaatcactcaccttaatccacatcattgtat |
8074338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 24 - 254
Target Start/End: Complemental strand, 40955455 - 40955225
Alignment:
| Q |
24 |
accaaccaagtgaagaaacttgatcaccagattttcccaccaacggaatcatgtgtattagctttgattccatagagtaaatgcagcacctagcaggaaa |
123 |
Q |
| |
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||||||||||||| ||||| |||||||| |||||| |||| | || |||||||||||||||||| ||||| | |||||||| ||||| |||||||| |
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| T |
40955455 |
accaaccaagtgaggaaacctgatcaccggatttttccacaattgggatcatgtgtattagcttttcctccatcaaataaatgcaacacctcgcaggaaa |
40955356 |
T |
|
| Q |
124 |
agtctcgagataatacacacaatcgctcagatgtccccatttacccggtcttctcatagcaaaatgacccttacctcctaagaacaatgctttaccaccc |
223 |
Q |
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||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||||| | || |||||||||||||||||||||| ||| ||||| |||| |
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| T |
40955355 |
agtctcgagataatacacaaaattgctaagatgtccccatttacccagtcttctcacatcacaatgacccttacctcctaagaataattctttatcacct |
40955256 |
T |
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| Q |
224 |
aaatcactcaccttaatccacatcattgtat |
254 |
Q |
| |
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| ||| | ||||||||||||| ||||||||| |
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| T |
40955255 |
agatcgcccaccttaatccacctcattgtat |
40955225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 24 - 254
Target Start/End: Original strand, 40954428 - 40954656
Alignment:
| Q |
24 |
accaaccaagtgaagaaacttgatcaccagattttcccaccaacggaatcatgtgtattagctttgattccatagagtaaatgcagcacctagcaggaaa |
123 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||||| | || ||||||||||||||||||| ||||| || |||||||| ||||| |||||||| |
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| T |
40954428 |
accaaccaagtgaggaaacatgatcaccgaattttcccacaattgggatcatgtgtattagctttgcctccatcgaataaatgcaacacctcgcaggaaa |
40954527 |
T |
|
| Q |
124 |
agtctcgagataatacacacaatcgctcagatgtccccatttacccggtcttctcatagcaaaatgacccttacctcctaagaacaatgctttaccaccc |
223 |
Q |
| |
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||||| |||||||| |||||| ||| |||||| | ||||||||| ||||||||| | || ||||||||||| |||||||||| ||||||||| |||| |
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| T |
40954528 |
agtcttgagataat--acacaactgctaagatgtacgcatttacccagtcttctcacatcacaatgacccttaactcctaagaataatgctttatcacct |
40954625 |
T |
|
| Q |
224 |
aaatcactcaccttaatccacatcattgtat |
254 |
Q |
| |
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||||| | ||||||||||||| ||||||||| |
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|
| T |
40954626 |
aaatcgcccaccttaatccacctcattgtat |
40954656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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