View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_173 (Length: 250)
Name: NF6868A_low_173
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_173 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 58 - 234
Target Start/End: Original strand, 18460255 - 18460431
Alignment:
| Q |
58 |
ttgcttcccaatttcaaagaataatatgaacctgctccattattcctttgtacataatcatcagtgccctctttccataagcactgtcgtaattataagc |
157 |
Q |
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| T |
18460255 |
ttgcttcccaatttcaaagaataatatgaacctgctccattattcctttgtacataatcatcagtgccctctttccataagcactgtcgtaattataagc |
18460354 |
T |
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| Q |
158 |
acttaatgaaggcccagccctgtaagccatgaaggaagtcaggaaaatcaacaaagatttcaaaatccattgatgtc |
234 |
Q |
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| T |
18460355 |
acttaatgaaggcccagccctgtaagccatgaaggaagtcaggaacatcaacaaagatttcaaaattcattgatgtc |
18460431 |
T |
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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 18460198 - 18460230
Alignment:
| Q |
1 |
agattaattgttctcatctctacaaataaccaa |
33 |
Q |
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| T |
18460198 |
agattaattgttctcatctctacaaataaccaa |
18460230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 26844851 - 26844942
Alignment:
| Q |
91 |
gctccattattcctttgtacataatcatcagtgccctctttccataagcactgtcgtaattataagcacttaatgaaggcccagccctgtaa |
182 |
Q |
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| T |
26844851 |
gctccagtattccattgtacaaaagcatcagtgctctcttcccataagcactatcataattatatgcacttaacgaaggccctgccctgtaa |
26844942 |
T |
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