View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_176 (Length: 250)

Name: NF6868A_low_176
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_176
NF6868A_low_176
[»] chr3 (27 HSPs)
chr3 (25-249)||(41985625-41985852)
chr3 (27-249)||(41980851-41981073)
chr3 (144-246)||(9494822-9494924)
chr3 (25-246)||(9448314-9448535)
chr3 (130-246)||(9343845-9343961)
chr3 (130-238)||(9329844-9329952)
chr3 (130-238)||(9336548-9336656)
chr3 (130-246)||(9407366-9407482)
chr3 (133-246)||(9655360-9655473)
chr3 (133-246)||(9425573-9425686)
chr3 (133-246)||(9646367-9646480)
chr3 (130-246)||(9617463-9617579)
chr3 (130-238)||(9695616-9695724)
chr3 (145-238)||(9340679-9340772)
chr3 (130-232)||(9416587-9416689)
chr3 (130-246)||(9397785-9397903)
chr3 (144-234)||(9352913-9353003)
chr3 (145-238)||(9347995-9348088)
chr3 (145-238)||(9369649-9369742)
chr3 (124-245)||(9756381-9756502)
chr3 (130-246)||(9432896-9433012)
chr3 (138-246)||(9626488-9626596)
chr3 (164-232)||(9441815-9441883)
chr3 (186-238)||(9614009-9614061)
chr3 (130-178)||(9686751-9686799)
chr3 (183-242)||(9377090-9377149)
chr3 (216-245)||(16011768-16011797)
[»] chr8 (2 HSPs)
chr8 (25-190)||(13170579-13170744)
chr8 (25-248)||(44688680-44688903)
[»] chr1 (8 HSPs)
chr1 (25-249)||(18991201-18991422)
chr1 (148-246)||(235213-235311)
chr1 (179-246)||(4439860-4439927)
chr1 (135-249)||(4428628-4428742)
chr1 (153-246)||(8814385-8814478)
chr1 (148-246)||(251412-251510)
chr1 (153-238)||(231589-231674)
chr1 (155-246)||(246867-246958)
[»] chr2 (1 HSPs)
chr2 (133-246)||(20694304-20694417)
[»] chr6 (7 HSPs)
chr6 (130-246)||(7041496-7041612)
chr6 (148-246)||(7046839-7046937)
chr6 (148-209)||(7025793-7025854)
chr6 (148-209)||(7029850-7029911)
chr6 (148-209)||(9170854-9170915)
chr6 (150-209)||(9159515-9159574)
chr6 (148-209)||(7012857-7012918)
[»] chr7 (2 HSPs)
chr7 (143-249)||(3695687-3695792)
chr7 (130-238)||(450111-450219)
[»] chr5 (1 HSPs)
chr5 (144-246)||(18571108-18571213)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 41985852 - 41985625
Alignment:
Q  25 atggaggggacatgaaattcctggtagagagtgagcgtga---gttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatgg 121  Q
    ||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41985852 atggaggggacatgaaattcctggtagagagtgagggtgatcagttgttgctagtagacatatatgactctcattgttttggtttccccggtgaagatgg 41985753  T
Q  122 tttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985752 tttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcg 41985653  T
Q  222 ttttctgcttctgcttcggatttgtctg 249  Q
    ||||||||||||||||||||||||||||    
T  41985652 ttttctgcttctgcttcggatttgtctg 41985625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 27 - 249
Target Start/End: Complemental strand, 41981073 - 41980851
Alignment:
Q  27 ggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggtttaa 126  Q
    ||||||||  ||||||||||||||||||||||| |||| || |||||||| ||||| ||| ||||||||||| |||| |||||||||||||||||||| |    
T  41981073 ggaggggatgtgaaattcctggtagagagtgagggtgaattattgctagtggacatttatcactctcattgtgttgggttccctggtgaagatggtttca 41980974  T
Q  127 agcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttc 226  Q
    | ||||||||||| || |||| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  41980973 atcttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgttttt 41980874  T
Q  227 tgcttctgcttcggatttgtctg 249  Q
    ||||||||||||  |||||||||    
T  41980873 tgcttctgcttcaaatttgtctg 41980851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 144 - 246
Target Start/End: Original strand, 9494822 - 9494924
Alignment:
Q  144 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 243  Q
    |||||||||||||||| || |||||| || |||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9494822 cttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatt 9494921  T
Q  244 tgt 246  Q
    |||    
T  9494922 tgt 9494924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 246
Target Start/End: Complemental strand, 9448535 - 9448314
Alignment:
Q  25 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 124  Q
    ||||||||||||| |||||| | || || || ||| | || ||||||||||| ||||| ||||| | |  |||||| |  ||||| |||   |||| | |    
T  9448535 atggaggggacataaaattcttagttgatagagagggagacttgttgctagtggacatttatgagtgtttttgtttcgagttcccgggtcctgatgctat 9448436  T
Q  125 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttt 224  Q
    || | |||||||||| |  ||| |||||||||||||||||||||| |||||  | | |||||||||||| |||||||||||||||||||  |||||||||    
T  9448435 aagggttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttt 9448336  T
Q  225 tctgcttctgcttcggatttgt 246  Q
    ||||||||||||||||||||||    
T  9448335 tctgcttctgcttcggatttgt 9448314  T

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Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 130 - 246
Target Start/End: Complemental strand, 9343961 - 9343845
Alignment:
Q  130 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 229  Q
    |||||||||| |  |||||||||| ||||||||| ||||| |||||  | | |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T
Q  230 ttctgcttcggatttgt 246  Q
    |||||||||||||||||    
T  9343861 ttctgcttcggatttgt 9343845  T

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Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 9329952 - 9329844
Alignment:
Q  130 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 229  Q
    |||||||||| || ||||||||||| ||||| |  |||||||||||||||| |||||| ||||  |||||||||||||||||||||| ||||||||||||    
T  9329952 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatggatattcgttttctgc 9329853  T
Q  230 ttctgcttc 238  Q
    |||||||||    
T  9329852 ttctgcttc 9329844  T

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Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 9336656 - 9336548
Alignment:
Q  130 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 229  Q
    |||||||||| || ||||||||||| ||||| |  ||||||||| || ||| |||||| ||||  |||||||||||||||||||||||||||||||||||    
T  9336656 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttttctgc 9336557  T
Q  230 ttctgcttc 238  Q
    |||||||||    
T  9336556 ttctgcttc 9336548  T

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Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 130 - 246
Target Start/End: Complemental strand, 9407482 - 9407366
Alignment:
Q  130 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 229  Q
    |||||||||| |||||||| |||||| | || | |||||| ||||||  ||||||||||||||| ||||||||||| | |||||||||||| ||||||||    
T  9407482 ttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgc 9407383  T
Q  230 ttctgcttcggatttgt 246  Q
    ||| |||||||||||||    
T  9407382 ttcagcttcggatttgt 9407366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 9655360 - 9655473
Alignment:
Q  133 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 232  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| |||||  | ||||||||||||||||| ||    
T  9655360 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgcatc 9655459  T
Q  233 tgcttcggatttgt 246  Q
     |||||||||||||    
T  9655460 agcttcggatttgt 9655473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 9425686 - 9425573
Alignment:
Q  133 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 232  Q
    ||||||| |||||||| |||||| | || |||||||| ||||||  ||||||| || |||| ||||||||||| | |||||||||||| |||||||||||    
T  9425686 atgtgtttagacttgacgagaagaataaaaaatgggtgaagttgatgagtttaaggaatagggttttgttctttgtgaatggatgttcattttctgcttc 9425587  T
Q  233 tgcttcggatttgt 246  Q
     |||||||||||||    
T  9425586 agcttcggatttgt 9425573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 9646367 - 9646480
Alignment:
Q  133 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 232  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| || ||  | ||||||||||||||||| ||    
T  9646367 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgttttctgcatc 9646466  T
Q  233 tgcttcggatttgt 246  Q
     |||||||||||||    
T  9646467 agcttcggatttgt 9646480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 246
Target Start/End: Original strand, 9617463 - 9617579
Alignment:
Q  130 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 229  Q
    |||| ||||||||  || ||||||| |||||||||||||| ||||||   | |||||||||||| ||||||||| | | |||||||||||| ||||||||    
T  9617463 ttgaagtgttcaggtttcatgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgc 9617562  T
Q  230 ttctgcttcggatttgt 246  Q
    ||||||||| |||||||    
T  9617563 ttctgcttcagatttgt 9617579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 9695616 - 9695724
Alignment:
Q  130 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 229  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||| | | |||||||||||| |||||||| |||||| | |  |||||||| |||||    
T  9695616 ttgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctgc 9695715  T
Q  230 ttctgcttc 238  Q
     ||||||||    
T  9695716 atctgcttc 9695724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 9340772 - 9340679
Alignment:
Q  145 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 238  Q
    ||||||||||||||||||| ||||| ||||||  || ||| |||||||| ||||| ||| | |||  |||||||||||||||||||||||||||    
T  9340772 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggatagggtttttttcattgggcgtggatgttcgttttctgcttctgcttc 9340679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 9416689 - 9416587
Alignment:
Q  130 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 229  Q
    ||||||||||| | ||||| |||||| | || |||||||| |||||| |||||||||||||||| || |||||||| | ||||  |||||| ||||||||    
T  9416689 ttgatgtgttctgtcttgacgagaagaataaaaaatgggtgaagttgacgagtttaggggatagggtgttgttcttcgtgaataaatgttcattttctgc 9416590  T
Q  230 ttc 232  Q
    |||    
T  9416589 ttc 9416587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 246
Target Start/End: Complemental strand, 9397903 - 9397785
Alignment:
Q  130 ttgatgtgttcagacttgatgagaaggagaagaaa--tgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttct 227  Q
    |||||||||| |||||||| |||||| | || |||  || || ||||||  ||||||||||||||| || |||||||| | |||||||||||| |||||     
T  9397903 ttgatgtgtttagacttgacgagaagtataaaaaaaatgcgtgaagttgatgagtttaggggatagggtcttgttctttgtgaatggatgttcattttcc 9397804  T
Q  228 gcttctgcttcggatttgt 246  Q
    ||||| |||| ||||||||    
T  9397803 gcttcagctttggatttgt 9397785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 234
Target Start/End: Complemental strand, 9353003 - 9352913
Alignment:
Q  144 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctg 234  Q
    |||||||||| ||||||||| ||||| ||||||   |  ||||||| ||| ||||||||  |||||| |||||||||||||||||||||||    
T  9353003 cttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgcttctg 9352913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 9348088 - 9347995
Alignment:
Q  145 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 238  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  |||||||||||||||||||||||||||    
T  9348088 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttc 9347995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 9369742 - 9369649
Alignment:
Q  145 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 238  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  |||||||||||||||||||||||||||    
T  9369742 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttc 9369649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 245
Target Start/End: Complemental strand, 9756502 - 9756381
Alignment:
Q  124 taaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 223  Q
    ||||| |||||||||  || ||||||||||| ||||| |  ||||||||||||| || ||| |||||||| |||||||| || ||| | || ||||| ||    
T  9756502 taaagattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttggtgaatttgggggatagggttttgtttttcggggaaggctgttcatt 9756403  T
Q  224 ttctgcttctgcttcggatttg 245  Q
     ||||| ||||| |||||||||    
T  9756402 ctctgcatctgcatcggatttg 9756381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 246
Target Start/End: Complemental strand, 9433012 - 9432896
Alignment:
Q  130 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 229  Q
    ||||||| |||||||||||||||||||||| ||| ||||| ||| |   || |||||| ||||| ||||||||| | |||  || || ||| ||||||||    
T  9433012 ttgatgttttcagacttgatgagaaggagaggaagtgggtgaagatcaagaatttaggagatagggttttgttcatagggcttgaatattccttttctgc 9432913  T
Q  230 ttctgcttcggatttgt 246  Q
    ||| || ||||||||||    
T  9432912 ttcagcctcggatttgt 9432896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 9626488 - 9626596
Alignment:
Q  138 ttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgctt 237  Q
    |||||| || |||||||||||||||||||||| || |||  || |||||||||||| |||||||| || || || |||   || |||||||| || ||||    
T  9626488 ttcagatttcatgagaaggagaagaaatgggtgaatttgatgaatttaggggatagggttttgttttttggcaaaggaacatcattttctgcatcagctt 9626587  T
Q  238 cggatttgt 246  Q
    |||||||||    
T  9626588 cggatttgt 9626596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 9441815 - 9441883
Alignment:
Q  164 atgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 232  Q
    |||||| ||||||  ||||||||||||||| ||||||||||| | ||||  |||||| |||||||||||    
T  9441815 atgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttc 9441883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 9614009 - 9614061
Alignment:
Q  186 ggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 238  Q
    |||||||  ||||| |||||||||| ||||||||| |||||||||||||||||    
T  9614009 ggggatatggtttttttcttggggagtggatgttcattttctgcttctgcttc 9614061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 9686799 - 9686751
Alignment:
Q  130 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggc 178  Q
    ||||||| ||||| ||||||||||| |||||||| ||||||||||||||    
T  9686799 ttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagttggc 9686751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 9377149 - 9377090
Alignment:
Q  183 ttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggat 242  Q
    |||||||||||  |||||||  |||||| ||||||||||||| |||||||||||| ||||    
T  9377149 ttaggggataggattttgtttgtggggagtggatgttcgtttcctgcttctgcttgggat 9377090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 16011768 - 16011797
Alignment:
Q  216 tgttcgttttctgcttctgcttcggatttg 245  Q
    ||||||||||||||||||||||||||||||    
T  16011768 tgttcgttttctgcttctgcttcggatttg 16011797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 13170579 - 13170744
Alignment:
Q  25 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 124  Q
    |||||||||||||||||||| |||| ||||| ||| |||||||||||||||| ||||| |||||| ||||| |||  ||||||||||||||| |||||||    
T  13170579 atggaggggacatgaaattcttggtcgagagcgagggtgagttgttgctagtggacatctatgaccctcatcgttacggtttccctggtgaatatggttt 13170678  T
Q  125 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttagggga 190  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13170679 aaagcttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttggcgagtttagggga 13170744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 25 - 248
Target Start/End: Original strand, 44688680 - 44688903
Alignment:
Q  25 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 124  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||| |||||||||||| ||||||| ||||| |||||||||||| |    
T  44688680 atggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtggacatctatgactctcatggttttgggttcccgggtgaagatggtct 44688779  T
Q  125 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttt 224  Q
    |  ||||||||||||||  ||  |||||||| | ||||||||||| |||||  ||||||||||| ||||| |||||||||||||||||| || ||| |||    
T  44688780 acggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattt 44688879  T
Q  225 tctgcttctgcttcggatttgtct 248  Q
    ||| || |||||||||||||||||    
T  44688880 tctactactgcttcggatttgtct 44688903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 18991422 - 18991201
Alignment:
Q  25 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 124  Q
    |||||||||| ||||||||| |||||||| ||||  |||||||||||||||| ||||| | |||||| ||||||||||| |||||||| ||| | ||| |    
T  18991422 atggaggggatatgaaattcttggtagagtgtgaaggtgagttgttgctagtggacatctgtgactcgcattgttttgggttccctggcgaaaaaggtct 18991323  T
Q  125 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttt 224  Q
    ||| ||  | ||||| || ||| ||||||   ||||| |||||   | || |  ||| |||||| |||| ||||||||||||||||||||||||||||||    
T  18991322 aaaactgaaggtgtttaggcttaatgagagaaagaaggaatgg---aggtcgaagagcttagggaatagggttttgttcttggggaatggatgttcgttt 18991226  T
Q  225 tctgcttctgcttcggatttgtctg 249  Q
    |||||||||||||| ||||| ||||    
T  18991225 tctgcttctgcttctgatttatctg 18991201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 246
Target Start/End: Complemental strand, 235311 - 235213
Alignment:
Q  148 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgt 246  Q
    |||| ||||||||||| ||||| |||||||| | |||||||||||||||||| |||||||||     ||||||||||||||||||||||||||||||||    
T  235311 atgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggggttgctatgttcgttttctgcttctgcttcggatttgt 235213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 4439927 - 4439860
Alignment:
Q  179 gagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgt 246  Q
    |||||| || ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4439927 gagtttgggagatagggttttgtttttggggaatggatgttcgttttctgcttctgcttcggatttgt 4439860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 4428742 - 4428628
Alignment:
Q  135 gtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctg 234  Q
    ||||| || ||||||||||||| |   |||||||| || ||| ||||||| |||||||| |||||||| |||||||||||||||| ||||||||| ||||    
T  4428742 gtgtttaggcttgatgagaaggcgcgtaaatgggtgaaattgacgagtttgggggatagggttttgtttttggggaatggatgtttgttttctgcctctg 4428643  T
Q  235 cttcggatttgtctg 249  Q
    |||| || |||||||    
T  4428642 cttctgagttgtctg 4428628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 8814385 - 8814478
Alignment:
Q  153 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgt 246  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||      ||||| |||||||||||||||| ||||||||    
T  8814385 aaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttggggtccttgtgttcattttctgcttctgctttggatttgt 8814478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 251412 - 251510
Alignment:
Q  148 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgt 246  Q
    |||| ||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||||||     |||||| ||||||| |||||| ||||||||||    
T  251412 atgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttggggtggctatgttcattttctgtttctgcatcggatttgt 251510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 231674 - 231589
Alignment:
Q  153 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 238  Q
    ||||||| ||| ||||| |||||||| | ||||||||||| ||||||||||||||||     |||||| |||||||||||||||||    
T  231674 aaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggtccctatgttcattttctgcttctgcttc 231589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 246958 - 246867
Alignment:
Q  155 ggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgt 246  Q
    ||||||||||||||| |||||||| | |||||| |||| ||||||||||||||||      || || |||||||||||||||| ||||||||    
T  246958 ggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttggggttgttctggtcattttctgcttctgctttggatttgt 246867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 20694304 - 20694417
Alignment:
Q  133 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 232  Q
    |||||||||| |||||||| ||||||||||||||||| |  ||| | ||||| |||||||| |||||||| |||||||||||||||||||||||||||||    
T  20694304 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgcttc 20694403  T
Q  233 tgcttcggatttgt 246  Q
    ||||||||||||||    
T  20694404 tgcttcggatttgt 20694417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 130 - 246
Target Start/End: Complemental strand, 7041612 - 7041496
Alignment:
Q  130 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 229  Q
    ||||| |||| | |||| |||||||||||||||| ||||| |||||| | |||||||||||||| ||||||||||||||  | | ||||||||| ||||     
T  7041612 ttgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgt 7041513  T
Q  230 ttctgcttcggatttgt 246  Q
    |||||||||||||||||    
T  7041512 ttctgcttcggatttgt 7041496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 148 - 246
Target Start/End: Complemental strand, 7046937 - 7046839
Alignment:
Q  148 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgt 246  Q
    |||||||||||||||| ||||| |||||  ||||||||||||||| |||||||||||||||||    |||||||||||||||||||  ||| |||||||    
T  7046937 atgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgcttctttttcagatttgt 7046839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 7025854 - 7025793
Alignment:
Q  148 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 209  Q
    |||||||||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||    
T  7025854 atgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttgggg 7025793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 7029911 - 7029850
Alignment:
Q  148 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 209  Q
    |||||||||||||||| ||||| |||||| ||||||| |||||||| |||||||||||||||    
T  7029911 atgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 9170915 - 9170854
Alignment:
Q  148 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 209  Q
    |||||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||    
T  9170915 atgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9170854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 9159515 - 9159574
Alignment:
Q  150 gagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 209  Q
    |||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||    
T  9159515 gagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9159574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 7012918 - 7012857
Alignment:
Q  148 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 209  Q
    |||||||||||||||| ||||| |||||| | |||||||| |||||  ||||||||||||||    
T  7012918 atgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 7012857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 3695792 - 3695687
Alignment:
Q  143 acttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggat 242  Q
    |||| |||||||| ||||||| ||  ||||||||  ||||||||||||||||||||||||||| || |    |||||| |||||||||  ||||||||||    
T  3695792 acttaatgagaagaagaagaagtga-tcaagttgtagagtttaggggatagagttttgttcttcggtatcatatgttcattttctgctattgcttcggat 3695694  T
Q  243 ttgtctg 249  Q
    |||||||    
T  3695693 ttgtctg 3695687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 450111 - 450219
Alignment:
Q  130 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 229  Q
    |||||||||| || ||||||||||||||||| || ||||||||||||  || |||||| |||| | |||||||||| ||  ||   | ||| ||||||||    
T  450111 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttcttaggcgatctgtattccttttctgc 450210  T
Q  230 ttctgcttc 238  Q
    |||||||||    
T  450211 ttctgcttc 450219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 246
Target Start/End: Complemental strand, 18571213 - 18571108
Alignment:
Q  144 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagtt---ttgttcttggggaatggatgttcgttttctgcttctgcttcgg 240  Q
    |||||||||||||||||||| ||||| || ||| ||||||||||||||| ||||   |||||||| || |  | | |||| ||||||  |||||||||||    
T  18571213 cttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggatacagttgttttgttcttaggcatggcaggttctttttctatttctgcttcgg 18571114  T
Q  241 atttgt 246  Q
    ||||||    
T  18571113 atttgt 18571108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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