View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_179 (Length: 250)
Name: NF6868A_low_179
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_179 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 87602 - 87358
Alignment:
| Q |
1 |
gtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87602 |
gtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgct |
87503 |
T |
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| Q |
101 |
cggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87502 |
cggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactctt |
87403 |
T |
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| Q |
201 |
gttcacatttttaaatttcttctttgactccatattcatctcagt |
245 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
87402 |
gttcacatttttcaatttcttctttgactccatattcatctcagt |
87358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 95618 - 95388
Alignment:
| Q |
1 |
gtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgct |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
95618 |
gtctcatgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcacaagcatgct |
95519 |
T |
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| Q |
101 |
cggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactctt |
200 |
Q |
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| T |
95518 |
cggcgtgaccctgagggaagtaaaagacctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatg--------------ccacactctt |
95433 |
T |
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| Q |
201 |
gttcacatttttaaatttcttctttgactccatattcatctcagt |
245 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
95432 |
gttcacatttttcaatttcttttttgactccatattcatctcagt |
95388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 40878681 - 40878925
Alignment:
| Q |
1 |
gtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878681 |
gtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgct |
40878780 |
T |
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| Q |
101 |
cggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878781 |
cggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactctt |
40878880 |
T |
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| Q |
201 |
gttcacatttttaaatttcttctttgactccatattcatctcagt |
245 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40878881 |
gttcacatttttcaatttcttctttgactccatattcatctcagt |
40878925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 40870664 - 40870894
Alignment:
| Q |
1 |
gtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgct |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
40870664 |
gtctcatgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcacaagcatgct |
40870763 |
T |
|
| Q |
101 |
cggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactctt |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| |
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| T |
40870764 |
cggcgtgaccctgagggaagtaaaagacctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatg--------------ccacactctt |
40870849 |
T |
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| Q |
201 |
gttcacatttttaaatttcttctttgactccatattcatctcagt |
245 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
40870850 |
gttcacatttttcaatttcttttttgactccatattcatctcagt |
40870894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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