View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_180 (Length: 250)
Name: NF6868A_low_180
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_180 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 178242 - 178488
Alignment:
| Q |
1 |
caaactagaagagttgaaagaggaatccaaggaagaagccaaagttgatgacaccaaggttgaattgaaagttctaccatcacatttgaaatatgtgttc |
100 |
Q |
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| T |
178242 |
caaactagaagagttgaaagaggactccaaggaagaagccaaagttgatgacaccaaggttgaattgaaagttttaccatcacatgtgaaatatgtgttc |
178341 |
T |
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| Q |
101 |
cttgaagatgatggtaccaaaccggtgatcattagtagctccttgtccgtcactgaagaagcaaagttggtggaaatcctcaagttcaacaaagaagcga |
200 |
Q |
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| T |
178342 |
cttgaagatggtggtaccaaaccggtgatcattagtagctccttgtccgtcactgaagaagcaaagttggtggaaatcctcaagttcaacaaagaagcga |
178441 |
T |
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| Q |
201 |
tagggtggaaattatccgatttgaaagggagatgtccatctcattgc |
247 |
Q |
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| T |
178442 |
tagggtggaaattatccgatttgaaagggatatgtccatcttattgc |
178488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 20171865 - 20172083
Alignment:
| Q |
2 |
aaactagaagagttgaaagaggaatccaaggaagaagccaaagttgatgacaccaaggttgaattgaaagttctaccatcacatttgaaatatgtgttcc |
101 |
Q |
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| T |
20171865 |
aaacttgaggagttgaaagatgagtccaaggaagaatccaaagttggtgatgccaaggttgaactaaaagtcttaccatcacacttgaagtacgtttttt |
20171964 |
T |
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| Q |
102 |
ttgaagatgatggtaccaaaccggtgatcattagtagctccttgtccgtcactgaagaagcaaagttggtggaaatcctcaagttcaacaaagaagcgat |
201 |
Q |
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| T |
20171965 |
ttgaaaatgatggtaccaaaccggttaacattagtagctccttgtccgtcaaagaggaaaaaaaattggtcgaagtcctcaagagtaataaagaagcaat |
20172064 |
T |
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| Q |
202 |
agggtggaaattatccgat |
220 |
Q |
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| T |
20172065 |
aggttggaagttgtccgat |
20172083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 17787533 - 17787590
Alignment:
| Q |
80 |
tcacatttgaaatatgtgttccttgaagatgatggtaccaaaccggtgatcattagta |
137 |
Q |
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| T |
17787533 |
tcacatctaaaatatgtatgccttgaagaggatggcacaaaaccggtgatcattagta |
17787590 |
T |
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