View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_182 (Length: 250)
Name: NF6868A_low_182
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_182 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 23343100 - 23343330
Alignment:
| Q |
17 |
cacacatgataaaacagacacataaactgcaaggcatgacaaaaacacggtttcaacttgaaatataaacaacagcaccatgaaaaccaacacacatgca |
116 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23343100 |
cacacatgataaaacagacacacaaactgcaaggcatgacaaaaacacggtttcaacttgaaatataaacaacagcaccatgaaaaccaacacacgtgca |
23343199 |
T |
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| Q |
117 |
ccactcaatgtttgttcttcctgattcaacaatttaatgaattgataacttcatcaaaaacaaatctacaccattcagcagcaaagaaacatagcatgca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23343200 |
ccactcaatgtttgttcttcctgattcaacaatttaatgaattgataacttcatcaaaaacaaatttacaccattcagcagcaaagaaacatagcatgca |
23343299 |
T |
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| Q |
217 |
tatatataattttaatggcaacaccaaactc |
247 |
Q |
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||||||| | ||||||||||| | ||||||| |
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| T |
23343300 |
tatatatgactttaatggcaatatcaaactc |
23343330 |
T |
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