View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_186 (Length: 249)
Name: NF6868A_low_186
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_186 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 34571148 - 34570946
Alignment:
| Q |
21 |
tcctcaatggaatggtttgtccttctgacttgccacttaattgctnnnnnnnttgtttcaatttgaatgtttatttacttatattctgtattggttttat |
120 |
Q |
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| T |
34571148 |
tcctcaatggaatggtttgtccttctgacttgccacttaattgctaaaaaaattgtttcaatttgaatgtttctttacttatattctgtattggttttat |
34571049 |
T |
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| Q |
121 |
atactaatatgcagagatattagagtttgatgctatggaagaaccaccatcagttttgtatgtggaagtttttgattttgacggtccatttgaccaggat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34571048 |
atactaatatgcagagatattagagtttgatgctatggaagaaccaccatcagttttgtatgtggaagtttttgattttgacggtccatttgaccaggat |
34570949 |
T |
|
| Q |
221 |
gtt |
223 |
Q |
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||| |
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| T |
34570948 |
gtt |
34570946 |
T |
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