View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_188 (Length: 249)
Name: NF6868A_low_188
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_188 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 17455560 - 17455331
Alignment:
| Q |
14 |
tggacatcatttcataattgtgaaaaaccaaatctacgaattagaatcataccttgcagtggcaacatacaaggttgacatattttgtgaagcaaacaca |
113 |
Q |
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| T |
17455560 |
tggacatcatttcataattgtgaaaaaccaaatctacgaattagaatcataccttgcagtggcaacatacaaggttgacatattttgtgaagcaaacaca |
17455461 |
T |
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| Q |
114 |
gaaatccttaattacattcttcggaaaatgctgcaaaatccataataagcacatcaaagaagtaacatttaatagttgtaaattatgaaaactgaaattg |
213 |
Q |
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| T |
17455460 |
gaaatctttaattacattcttcggaaaatgctgtaaaatccataataagcacatcaaagaagtaacatttaatagttgtaaattatgaaaattgaaattg |
17455361 |
T |
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| Q |
214 |
caacaactcgacatgtttagagaaatacat |
243 |
Q |
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| T |
17455360 |
caacaacttgacatgtttagagcaatacat |
17455331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 17393218 - 17393341
Alignment:
| Q |
16 |
gacatcatttcataattgtgaaaaaccaaatctacgaattagaatcataccttgcagtggcaacatacaaggttgacatattttgtgaagcaaacacaga |
115 |
Q |
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| T |
17393218 |
gacatcagttcataaatgtgaaaaataaaagctaatgattagaattataccttacagtggcaacattcaagggtgacatgttttgtgaagcagaggcaga |
17393317 |
T |
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| Q |
116 |
aatccttaattacattcttcggaa |
139 |
Q |
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| T |
17393318 |
aatccttgataacattctttggaa |
17393341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 17461661 - 17461572
Alignment:
| Q |
62 |
ataccttgcagtggcaacatacaaggttgacatattttgtgaagcaaacacagaaatccttaattacattcttcggaaaatgctgcaaaa |
151 |
Q |
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| T |
17461661 |
ataccttgcagtggcaacatacaatggtgatatgctttgtaaagcaaaggcagaaatccttgatgacattcttcgaaatattctgcaaaa |
17461572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 17393368 - 17393435
Alignment:
| Q |
154 |
cataataagcacatcaaagaagtaacatttaatagttgtaaattatgaaaactgaaattgcaacaact |
221 |
Q |
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| T |
17393368 |
cataataagtacatcaaagaagtaacatgaaatgatcgtaagttaagaaaactaaaattgcaacaact |
17393435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 40234789 - 40234861
Alignment:
| Q |
62 |
ataccttgcagtggcaacatacaaggttgacatattttgtgaagcaaacacagaaatccttaattacattctt |
134 |
Q |
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| T |
40234789 |
ataccttgcagtggcaacatacaaggctgatatgctttgtaaagcaaaggcagaaatccttaacgacattctt |
40234861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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