View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_193 (Length: 248)
Name: NF6868A_low_193
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_193 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 21706245 - 21706478
Alignment:
| Q |
1 |
aaatatgctttataatttcatcaacatttttcattttcagaacttgcccctaaaactggacttggaattatatgatttgcctcagttgaactccatatca |
100 |
Q |
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| T |
21706245 |
aaatatgctttataatttcatcaacctttttcattttcagaacttgcccctaaaactggacttggaattatatgatttgcctcagttgaactccatatca |
21706344 |
T |
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| Q |
101 |
tggttgggtcctacaactccaagacagactcagagtctccaatgtctcaagcatttaaaagttttctgttgtgaaaatctgaaatctctattctccatgg |
200 |
Q |
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| T |
21706345 |
tggttgggtcctacaactccaagacagactcagagtctccaatgtctcaagcatttacaagttttacgttgtgaaaatctgaaatctctattctccatgg |
21706444 |
T |
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| Q |
201 |
aggaatctagaagtctaccagagttgatgtccat |
234 |
Q |
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| T |
21706445 |
aggaatctagaagtctaccagagttgatgtccat |
21706478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 29 - 234
Target Start/End: Complemental strand, 21713191 - 21712986
Alignment:
| Q |
29 |
tttcattttcagaacttgcccctaaaactggacttggaattatatgatttgcctcagttgaactccatatcatggttgggtcctacaactccaagacaga |
128 |
Q |
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| T |
21713191 |
tttcatgttcagaacttgcccttaaaactggagttgtatttacatgttttgcctcagttgaaatccatatcatggcaggatcctacagctccaagacaga |
21713092 |
T |
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| Q |
129 |
ctcagagtctccaatgtctcaagcatttaaaagttttctgttgtgaaaatctgaaatctctattctccatggaggaatctagaagtctaccagagttgat |
228 |
Q |
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| T |
21713091 |
tatggagtctccaatgtctccagtatttaaaagtaggtgattgtgaaaatttgaaatctttgttctccatgaaggaatctagaagtctaccagagttgat |
21712992 |
T |
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| Q |
229 |
gtccat |
234 |
Q |
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| T |
21712991 |
gtccat |
21712986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 232
Target Start/End: Original strand, 21709236 - 21709388
Alignment:
| Q |
80 |
cctcagttgaactccatatcatggttgggtcctacaactccaagacagactcagagtctccaatgtctcaagcatttaaaagttttctgttgtgaaaatc |
179 |
Q |
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||||| |||||| |||||||||||||||||| || |||||||||||| | || |||||||||||||||| ||| || ||| ||| ||||||||||| |
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| T |
21709236 |
cctcaattgaacgccatatcatggttgggtcttataactccaagacaaattcggagtctccaatgtctccagcgttgaaatgttggtgattgtgaaaatc |
21709335 |
T |
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| Q |
180 |
tgaaatctctattctccatggaggaatctagaagtctaccagagttgatgtcc |
232 |
Q |
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| T |
21709336 |
tgaaatctctattctccgtgaaggaatctagaagtctactaaagttgatgtcc |
21709388 |
T |
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