View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_196 (Length: 248)

Name: NF6868A_low_196
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_196
NF6868A_low_196
[»] chr5 (12 HSPs)
chr5 (141-232)||(8366492-8366583)
chr5 (1-60)||(10927392-10927451)
chr5 (17-60)||(27646840-27646883)
chr5 (17-60)||(1822004-1822047)
chr5 (9-60)||(5066888-5066939)
chr5 (1-60)||(15513001-15513060)
chr5 (17-60)||(29680112-29680155)
chr5 (17-60)||(39147037-39147080)
chr5 (10-60)||(34867888-34867938)
chr5 (1-60)||(10926935-10926994)
chr5 (1-60)||(21886135-21886194)
chr5 (10-59)||(18750194-18750243)
[»] chr6 (9 HSPs)
chr6 (1-60)||(21312069-21312128)
chr6 (1-59)||(2891282-2891340)
chr6 (17-60)||(11062383-11062426)
chr6 (1-60)||(17851472-17851531)
chr6 (1-60)||(20126171-20126230)
chr6 (5-60)||(20735793-20735848)
chr6 (10-60)||(2681214-2681264)
chr6 (20-60)||(1991651-1991691)
chr6 (20-60)||(23776539-23776579)
[»] chr8 (13 HSPs)
chr8 (1-60)||(31283640-31283699)
chr8 (17-60)||(2044156-2044199)
chr8 (17-56)||(3745203-3745242)
chr8 (1-60)||(10729675-10729734)
chr8 (17-60)||(22549000-22549043)
chr8 (1-60)||(25147634-25147693)
chr8 (17-60)||(27925997-27926040)
chr8 (1-60)||(33852247-33852306)
chr8 (17-59)||(30527487-30527529)
chr8 (18-60)||(41913068-41913110)
chr8 (19-60)||(28453436-28453477)
chr8 (20-60)||(8080350-8080390)
chr8 (17-61)||(25144869-25144913)
[»] chr7 (7 HSPs)
chr7 (17-60)||(6747603-6747646)
chr7 (10-60)||(2611650-2611700)
chr7 (17-60)||(679914-679957)
chr7 (17-60)||(31406589-31406632)
chr7 (17-60)||(35474126-35474169)
chr7 (17-60)||(36422350-36422393)
chr7 (20-60)||(16192417-16192457)
[»] chr4 (7 HSPs)
chr4 (17-60)||(1645748-1645791)
chr4 (1-60)||(27029375-27029434)
chr4 (17-60)||(23943241-23943284)
chr4 (1-60)||(31817835-31817894)
chr4 (1-60)||(50398521-50398580)
chr4 (20-60)||(1464245-1464285)
chr4 (20-60)||(4186265-4186305)
[»] chr3 (14 HSPs)
chr3 (17-60)||(25238689-25238732)
chr3 (17-60)||(25239082-25239125)
chr3 (17-60)||(25248209-25248252)
chr3 (1-60)||(30529785-30529844)
chr3 (17-60)||(32227226-32227269)
chr3 (17-60)||(4067365-4067408)
chr3 (17-60)||(11180039-11180082)
chr3 (1-60)||(20885106-20885165)
chr3 (1-60)||(25230694-25230753)
chr3 (1-60)||(25238281-25238340)
chr3 (17-60)||(32227598-32227641)
chr3 (17-60)||(50347844-50347887)
chr3 (17-59)||(27187335-27187377)
chr3 (17-59)||(39641036-39641078)
[»] chr2 (11 HSPs)
chr2 (17-60)||(1707139-1707182)
chr2 (1-60)||(13191072-13191131)
chr2 (17-60)||(33175056-33175099)
chr2 (10-60)||(18098876-18098926)
chr2 (15-60)||(8073990-8074035)
chr2 (17-60)||(16379035-16379078)
chr2 (17-60)||(16379491-16379534)
chr2 (1-60)||(29259609-29259668)
chr2 (17-60)||(33771099-33771142)
chr2 (18-60)||(33174601-33174643)
chr2 (4-60)||(20502121-20502176)
[»] chr1 (8 HSPs)
chr1 (10-60)||(7548189-7548239)
chr1 (4-60)||(2328413-2328469)
chr1 (17-60)||(12883622-12883665)
chr1 (1-60)||(20060329-20060388)
chr1 (1-60)||(35759597-35759656)
chr1 (17-60)||(43057070-43057113)
chr1 (17-60)||(43057528-43057571)
chr1 (10-60)||(30872948-30872998)
[»] scaffold0664 (1 HSPs)
scaffold0664 (25-60)||(3995-4030)
[»] scaffold0557 (1 HSPs)
scaffold0557 (17-60)||(2203-2246)
[»] scaffold0333 (2 HSPs)
scaffold0333 (17-60)||(5119-5162)
scaffold0333 (2-60)||(4659-4717)
[»] scaffold0036 (1 HSPs)
scaffold0036 (17-57)||(26171-26211)


Alignment Details
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 8366583 - 8366492
Alignment:
Q  141 cccaactatattcgtgaatctcttcccaacatctttttgttgcttgcatcattcttacgaacatattcttccaatgtcttgtatcgtgatgt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  8366583 cccaactatattcgtgaatctcttcccaacatctttttgttgcttgcatcattcttacgaacatattcttccaatatcttgtatcctgatgt 8366492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 10927392 - 10927451
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| | ||||||| ||||| ||||||||||||||||||||||||||||||    
T  10927392 caagcacgtttaactgtggagttcttatggaatgggctaccaaaaagaagatgcatcttg 10927451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 27646840 - 27646883
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  27646840 tggagttcttatgaaatgggctaccaaaaagaagatgcatcttg 27646883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 1822047 - 1822004
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||    
T  1822047 tggagttcttatggaatgggctaccaaaaagaagatgcatcttg 1822004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 5066888 - 5066939
Alignment:
Q  9 tttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||||||||||||||| | ||||||||||||| ||||||||||    
T  5066888 tttaattgtggagtttttatgaaatagactaccaaaaagaaaatgcatcttg 5066939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 15513001 - 15513060
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||||| ||||||| ||||| |||| | |||||||||||||||||||||||    
T  15513001 caagcacgtttaattgtggagttcttatggaatgagataccaaaaagaagatgcatcttg 15513060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 29680112 - 29680155
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||    
T  29680112 tggagttcttatgtaatgggctaccaaaaagaagatgcatcttg 29680155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 39147080 - 39147037
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||    
T  39147080 tggagttcttatggaatgggctaccaaaaagaagatgcatcttg 39147037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 34867938 - 34867888
Alignment:
Q  10 ttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||| ||||||||| |||||||||| |||||| ||||||||||||||||||    
T  34867938 ttaactatggagttcttatgaaatgagctaccgaaaagaagatgcatcttg 34867888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 10926935 - 10926994
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| | ||||||| ||||| ||||| ||||||||| ||||||||||||||    
T  10926935 caagcacgtttaactgtggagttcttatggaatggactaccaaaaggaagatgcatcttg 10926994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 21886135 - 21886194
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||||| |||| | ||||||| ||||| |||| |||||| ||||||||||||||||||    
T  21886135 caagcacacttaactttggagttcttatggaatgagctaccgaaaagaagatgcatcttg 21886194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 18750194 - 18750243
Alignment:
Q  10 ttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatctt 59  Q
    |||||||||||||| ||||| |||  |||||| |||||||||||||||||    
T  18750194 ttaattatggagttcttatggaataagctaccgaaaagaagatgcatctt 18750243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 21312128 - 21312069
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| |||||| || ||||||||||||||||||||||||||||||||||||    
T  21312128 caagcacgtttaactatggatttcttatgaaatgggctaccaaaaagaagatgcatcttg 21312069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2891282 - 2891340
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatctt 59  Q
    ||||||||||||| | ||||||||||||| |||||||||||||||  ||||||||||||    
T  2891282 caagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 2891340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 11062426 - 11062383
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||    
T  11062426 tggagttcttatggaatgggctaccaaaaagaagatgcatcttg 11062383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 17851531 - 17851472
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||||  |||||| ||||||| ||||  ||||||||||||||||||||||||||||||    
T  17851531 caagcacgcttaattgtggagttcttatagaatgggctaccaaaaagaagatgcatcttg 17851472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 20126171 - 20126230
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||||  |||||| |||| || ||||| |||| |||||||||||||||||||||||||    
T  20126171 caagcacgcttaattgtggaattcttatggaatgtgctaccaaaaagaagatgcatcttg 20126230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 20735848 - 20735793
Alignment:
Q  5 cacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||| |||| ||||||||||||||  ||||| ||||| ||||||||||||||||||    
T  20735848 cacacttaactatggagtttttatagaatggactaccgaaaagaagatgcatcttg 20735793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 2681214 - 2681264
Alignment:
Q  10 ttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||| ||||||| ||||| |||| |||||| ||||||||||||||||||    
T  2681214 ttaattgtggagttcttatggaatgagctaccgaaaagaagatgcatcttg 2681264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 1991691 - 1991651
Alignment:
Q  20 agtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||| |||||||||| |||||| ||||||||||||||||||    
T  1991691 agttcttatgaaatgagctaccgaaaagaagatgcatcttg 1991651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 23776579 - 23776539
Alignment:
Q  20 agtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||| |||||||||| |||||| ||||||||||||||||||    
T  23776579 agttcttatgaaatgagctaccgaaaagaagatgcatcttg 23776539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31283640 - 31283699
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||||| |||| | ||||||| ||||| ||||||||||| ||||||||||||||||||    
T  31283640 caagcacacttaactgtggagttcttatggaatgggctaccgaaaagaagatgcatcttg 31283699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 2044199 - 2044156
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||    
T  2044199 tggagttattatggaatgggctaccaaaaagaaaatgcatcttg 2044156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 3745242 - 3745203
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcat 56  Q
    ||||||| ||||| ||||||||||||||||||||||||||    
T  3745242 tggagttattatggaatgggctaccaaaaagaagatgcat 3745203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 10729675 - 10729734
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||||  |||||| ||||||  ||||| ||| ||||||||||||||||||||||||||    
T  10729675 caagcacccttaattgtggagtccttatggaataggctaccaaaaagaagatgcatcttg 10729734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 22549000 - 22549043
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||||||||| |||| |||||| ||||||||||||||||||    
T  22549000 tggagtttttatggaatgagctaccgaaaagaagatgcatcttg 22549043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25147693 - 25147634
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||||  |||| ||||||||| ||||| |||| |||||| ||||||||||||||||||    
T  25147693 caagcacgattaactatggagttcttatggaatgagctaccgaaaagaagatgcatcttg 25147634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 27926040 - 27925997
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| |||||||||| |||||| ||||||||||||||||||    
T  27926040 tggagttcttatgaaatgagctaccgaaaagaagatgcatcttg 27925997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33852247 - 33852306
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||||  |||||| || |||| ||||| |||||||||||||||||||||| |||||||    
T  33852247 caagcacgcttaattgtgaagttcttatggaatgggctaccaaaaagaagatacatcttg 33852306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 30527487 - 30527529
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatctt 59  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||    
T  30527487 tggagttcttatgaaatgggctacccaaaagaagatgtatctt 30527529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 41913110 - 41913068
Alignment:
Q  18 ggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||    
T  41913110 ggagttcttatggaatgggctaccaaaaagaagacgcatcttg 41913068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 28453477 - 28453436
Alignment:
Q  19 gagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||| ||||| |||||||||||| |||||||||||||||||    
T  28453477 gagttcttatggaatgggctaccataaagaagatgcatcttg 28453436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 8080350 - 8080390
Alignment:
Q  20 agtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||| ||||| ||||||||||||||||||| ||||||||||    
T  8080350 agttcttatggaatgggctaccaaaaagaaaatgcatcttg 8080390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 25144913 - 25144869
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttgc 61  Q
    ||||||| ||||| |||| |||||| |||||||||||||||||||    
T  25144913 tggagttcttatggaatgagctaccgaaaagaagatgcatcttgc 25144869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 6747603 - 6747646
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||    
T  6747603 tggagtttttatggaataggctaccaaaaagaagatgcatcttg 6747646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 2611650 - 2611700
Alignment:
Q  10 ttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||| ||||||||| ||||  ||||||||||||||||||||||||||||||    
T  2611650 ttaactatggagttcttatagaatgggctaccaaaaagaagatgcatcttg 2611700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 679957 - 679914
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||    
T  679957 tggagttcttatggaatgggctaccaaaaagaatatgcatcttg 679914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 31406589 - 31406632
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| |||||||| |||||||| ||||||||||||||||||    
T  31406589 tggagttcttatgaaacgggctaccgaaaagaagatgcatcttg 31406632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 35474126 - 35474169
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| |||| |||||||||||||||||||||||||    
T  35474126 tggagttcttatggaatgagctaccaaaaagaagatgcatcttg 35474169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 36422393 - 36422350
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| |||||||||| |||||| ||||||||||||||||||    
T  36422393 tggagttcttatgaaatgagctaccgaaaagaagatgcatcttg 36422350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 16192457 - 16192417
Alignment:
Q  20 agtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||| ||||| ||||||||||||||| ||||||||||||||    
T  16192457 agttcttatggaatgggctaccaaaacgaagatgcatcttg 16192417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 1645748 - 1645791
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||    
T  1645748 tggagttcttatggaatgggctaccaaaaagaagatgcatcttg 1645791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 27029434 - 27029375
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||||| |||| | ||||||| ||||| ||||||||||| ||||||||||||||||||    
T  27029434 caagcacacttaactgtggagttcttatggaatgggctaccgaaaagaagatgcatcttg 27029375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 23943241 - 23943284
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| |||| |||||||||||||||||||||||||    
T  23943241 tggagttcttatggaatgtgctaccaaaaagaagatgcatcttg 23943284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31817835 - 31817894
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||||  |||| |||| |||| ||||||||||| ||||| ||||||||||||||||||    
T  31817835 caagcacgcttaactatgaagttcttatgaaatggactaccgaaaagaagatgcatcttg 31817894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 50398521 - 50398580
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||||  |||| ||||||||| ||||| |||| |||||| ||||||||||||||||||    
T  50398521 caagcacgcttaactatggagttcttatggaatgagctaccgaaaagaagatgcatcttg 50398580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 1464285 - 1464245
Alignment:
Q  20 agtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||| |||||||||| |||||| ||||||||||||||||||    
T  1464285 agttcttatgaaatgagctaccgaaaagaagatgcatcttg 1464245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 4186305 - 4186265
Alignment:
Q  20 agtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||| ||||| ||||||||||||||||||||||| ||||||    
T  4186305 agttcttatgcaatgggctaccaaaaagaagatgaatcttg 4186265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 25238689 - 25238732
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||    
T  25238689 tggagttcttatggaatgggctaccaaaaagaagatgcatcttg 25238732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 25239082 - 25239125
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||    
T  25239082 tggagttcttatggaatgggctaccaaaaagaagatgcatcttg 25239125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 25248252 - 25248209
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||    
T  25248252 tggagttattatggaatgggctaccaaaaagaagatgcatcttg 25248209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 30529844 - 30529785
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||||  |||| |||| |||| ||||| ||||||||||||||||||||||||||||||    
T  30529844 caagcacgcttaactatgaagttcttatggaatgggctaccaaaaagaagatgcatcttg 30529785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 32227226 - 32227269
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  32227226 tggagttcttatgaaatgagctaccaaaaagaagatgcatcttg 32227269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 4067365 - 4067408
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| |||| |||||||||||||||||||||||||    
T  4067365 tggagttcttatgtaatgagctaccaaaaagaagatgcatcttg 4067408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 11180039 - 11180082
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| |||||||||| |||||| ||||||||||||||||||    
T  11180039 tggagttcttatgaaatgagctaccgaaaagaagatgcatcttg 11180082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 20885106 - 20885165
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||||  |||||| ||||||| ||||| |||| ||||| |||||||||||||||||||    
T  20885106 caagcacgcttaattgtggagttcttatggaatgtgctactaaaaagaagatgcatcttg 20885165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25230694 - 25230753
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||||  |||||| | ||||| ||||| ||||||||||||||||||| ||||||||||    
T  25230694 caagcacgcttaattgttgagttcttatggaatgggctaccaaaaagaaaatgcatcttg 25230753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25238281 - 25238340
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||||  |||||| | ||||| ||||| ||||||||||||||||||| ||||||||||    
T  25238281 caagcacgcttaattgttgagttcttatggaatgggctaccaaaaagaaaatgcatcttg 25238340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 32227641 - 32227598
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| |||||||||| |||||| ||||||||||||||||||    
T  32227641 tggagttcttatgaaatgagctaccgaaaagaagatgcatcttg 32227598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 50347887 - 50347844
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| |||| |||||||||||||||||||||||||    
T  50347887 tggagttcttatggaatgagctaccaaaaagaagatgcatcttg 50347844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 27187335 - 27187377
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatctt 59  Q
    ||||||| |||||||||| |||||| |||||||||||||||||    
T  27187335 tggagttcttatgaaatgagctaccgaaaagaagatgcatctt 27187377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 39641078 - 39641036
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatctt 59  Q
    ||||||| ||||| |||| ||||||||||||||||||||||||    
T  39641078 tggagttcttatggaatgagctaccaaaaagaagatgcatctt 39641036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 1707182 - 1707139
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| |||||| |||||||||||||||||||||||||||||    
T  1707182 tggagttcttatgagatgggctaccaaaaagaagatgcatcttg 1707139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13191131 - 13191072
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||||  ||| ||||||||| |||| |||||| ||||||||||||||||||||||||    
T  13191131 caagcacacataactatggagttcttataaaatggactaccaaaaagaagatgcatcttg 13191072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 33175099 - 33175056
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  33175099 tggagttcttatgaaatgagctaccaaaaagaagatgcatcttg 33175056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 18098876 - 18098926
Alignment:
Q  10 ttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||| ||||||||| ||||| |||| |||||||||||||||||||||||||    
T  18098876 ttaactatggagttcttatggaatgagctaccaaaaagaagatgcatcttg 18098926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 8074035 - 8073990
Alignment:
Q  15 tatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||||| |||||||||||||||| | |||||||||||||||||    
T  8074035 tatggagttcttatgaaatgggctacaagaaagaagatgcatcttg 8073990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 16379078 - 16379035
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| |||| |||||||||||||||||||||||||    
T  16379078 tggagttcttatggaatgtgctaccaaaaagaagatgcatcttg 16379035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 16379534 - 16379491
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| |||| |||||||||||||||||||||||||    
T  16379534 tggagttcttatggaatgtgctaccaaaaagaagatgcatcttg 16379491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29259609 - 29259668
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||||  |||| |||| |||| |||||||||| |||||| ||||||||||||||||||    
T  29259609 caagcacgcttaactatgaagttcttatgaaatgagctaccgaaaagaagatgcatcttg 29259668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 33771142 - 33771099
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| |||||||||| |||||| ||||||||||||||||||    
T  33771142 tggagttcttatgaaatgagctaccgaaaagaagatgcatcttg 33771099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 33174643 - 33174601
Alignment:
Q  18 ggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||| ||||| ||||||||||| ||||||||||||||||||    
T  33174643 ggagttcttatggaatgggctaccgaaaagaagatgcatcttg 33174601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 20502176 - 20502121
Alignment:
Q  4 gcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||| ||||||| || |||| |||||||||||||||||||||| |||| ||||||||    
T  20502176 gcacgtttaattgtgaagttcttatgaaatgggctaccaaaaa-aagaagcatcttg 20502121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 7548239 - 7548189
Alignment:
Q  10 ttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||| ||||||| |||| |||||||||||||||||||| ||||||||||    
T  7548239 ttaattgtggagttcttatcaaatgggctaccaaaaagaatatgcatcttg 7548189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 2328469 - 2328413
Alignment:
Q  4 gcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||| ||||| | ||||||| ||||| |||| |||||||||||||||||||||||||    
T  2328469 gcacttttaactgtggagttcttatggaatgtgctaccaaaaagaagatgcatcttg 2328413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 12883665 - 12883622
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||||||||| |||| |||||||||||||| ||||||||||    
T  12883665 tggagtttttatggaatgagctaccaaaaagaaaatgcatcttg 12883622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 20060329 - 20060388
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||||| |||| | ||||||| ||||| |||| |||||| ||||||||||||||||||    
T  20060329 caagcacacttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttg 20060388  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 35759597 - 35759656
Alignment:
Q  1 caagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| |||| |||| ||||| |||| |||||| ||||||||||||||||||    
T  35759597 caagcacgtttaactatgaagttcttatggaatgagctaccgaaaagaagatgcatcttg 35759656  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 43057070 - 43057113
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||||    
T  43057070 tggagttcttatggaatgggctaccgaaaagaagatgcatcttg 43057113  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 43057528 - 43057571
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||||    
T  43057528 tggagttcttatggaatgggctaccgaaaagaagatgcatcttg 43057571  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 30872948 - 30872998
Alignment:
Q  10 ttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||||| ||||||| ||||  ||||| ||||||||||||||||||||||||    
T  30872948 ttaattgtggagttcttatagaatggactaccaaaaagaagatgcatcttg 30872998  T

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Target: scaffold0664 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 3995 - 4030
Alignment:
Q  25 ttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    |||| |||||||||||||||||||||||||||||||    
T  3995 ttataaaatgggctaccaaaaagaagatgcatcttg 4030  T

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Target: scaffold0557 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 2246 - 2203
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| ||| | ||||||||||||||||||||||||||||||    
T  2246 tggagttcttaaggaatgggctaccaaaaagaagatgcatcttg 2203  T

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Target: scaffold0333 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 5162 - 5119
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| |||||||||| |||||| ||||||||||||||||||    
T  5162 tggagttcttatgaaatgagctaccgaaaagaagatgcatcttg 5119  T

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Target: scaffold0333; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 4717 - 4659
Alignment:
Q  2 aagcacatttaattatggagtttttatgaaatgggctaccaaaaagaagatgcatcttg 60  Q
    ||||||| |||| | ||||||| |||| ||||| |||||| ||||||||||||||||||    
T  4717 aagcacacttaactgtggagttcttataaaatgagctaccgaaaagaagatgcatcttg 4659  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 26211 - 26171
Alignment:
Q  17 tggagtttttatgaaatgggctaccaaaaagaagatgcatc 57  Q
    ||||||| |||| ||||| ||||||||||||||||||||||    
T  26211 tggagttcttataaaatgagctaccaaaaagaagatgcatc 26171  T

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