View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_197 (Length: 248)
Name: NF6868A_low_197
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_197 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 46703568 - 46703805
Alignment:
| Q |
9 |
tggtgttaggctaatgaagaaagttaaaaactaacatataataatggaataaggattatagagcagaggaatcgatgatcaacaactacactttcctctt |
108 |
Q |
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| T |
46703568 |
tggtgttaggctaatgaagaaagttaaaaactaacatataataatggaataaggattatagagcagaggaatcgatgatcaacaactacactttcctctt |
46703667 |
T |
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| Q |
109 |
ccttttgcggatactctgacagaaatcagctctgtcgtcttcctttacatgttctgaaccagaagaaactagatcaatcgggtctttcctatgcactttc |
208 |
Q |
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| T |
46703668 |
ccttttgcggatactctgacaaaaatcagctctttcctcttcctttacatgttctgaaccagaagaaactagatcaattgggtctttcctatgcactttc |
46703767 |
T |
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| Q |
209 |
atcgtccttttcatgttttgatctaactttttgttctt |
246 |
Q |
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| T |
46703768 |
atcgtccttttcatgttttgatctaactttttgttctt |
46703805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 46685546 - 46685771
Alignment:
| Q |
9 |
tggtgttaggctaatgaagaaagttaaaaactaacatataataatggaataaggattatagagcagaggaatcgatgatcaacaactacactttcctctt |
108 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| ||||| |||| |||||||| || |
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| T |
46685546 |
tggtgttaggttaatgaagaaagttaaaaactaacatataataatggaataaagattatcaagcagtggaatcgacaatcaaaaact--actttcctttt |
46685643 |
T |
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| Q |
109 |
ccttttgcggatactctgacagaaatcagctctgtcgtcttcctttacatgttctgaaccagaagaaactagatcaatcgggtctttcctatgcactttc |
208 |
Q |
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| T |
46685644 |
cctttgtgggatactctgacataaatctgcattttcctcttccttttcatgatttgaaccagaagaagatggatcaatcggacgtttccccagcgctatc |
46685743 |
T |
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| Q |
209 |
atcgtccttttcatgttttgatctaact |
236 |
Q |
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| T |
46685744 |
attgtccttctcatgttttgatttaact |
46685771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 46677012 - 46677144
Alignment:
| Q |
9 |
tggtgttaggctaatgaagaaagttaaaaactaacatataa------taatggaataaggattatagagcagaggaatcgatgatcaacaactacacttt |
102 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| ||| | ||||||||| || || ||||||||||| |
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| T |
46677012 |
tggtgttaggctaatgaagaaagttaaaaactaaggtataataataataatggaataaagattatcaagctgtggaatcgataataaaaaactacacttt |
46677111 |
T |
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| Q |
103 |
cctcttccttttgcggatactctgacagaaatc |
135 |
Q |
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| T |
46677112 |
cctcttccttttgggggtactctgacagaaatc |
46677144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 21728216 - 21728321
Alignment:
| Q |
10 |
ggtgttaggctaatgaagaaagttaaaaactaacatataataatggaataaggattatagagcagaggaatcgatgatcaacaactacactttcctcttc |
109 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||| || ||| ||||| || ||||| |||||| ||| |||||| |
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| T |
21728216 |
ggtgttaggccaatgaagaaagttaaaaactaacatgtaataatggaataaagattataaagaagaagaatcaataatcaataactaccattttctcttc |
21728315 |
T |
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| Q |
110 |
cttttg |
115 |
Q |
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|||||| |
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| T |
21728316 |
cttttg |
21728321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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