View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6868A_low_204 (Length: 247)
Name: NF6868A_low_204
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_204 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 10289954 - 10289727
Alignment:
| Q |
1 |
gtcagcaagaaacgatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaat |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10289954 |
gtcagcaagaaacaatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaat |
10289855 |
T |
|
| Q |
101 |
gataccatagttttgattcaagaaaaaggtggttaatgttgttttattatgtttttacttcacacgcaattatatcgaccaataatatt-ttttcaatgc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10289854 |
gataccatagttttgattcaagaaaaaggtggttaatgttgttttattatgtttttacttcacacgcaattatatcgaccaataatatttttttcaatgc |
10289755 |
T |
|
| Q |
200 |
agtgtgaatattttttcgaactctttct |
227 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
10289754 |
agtgtgaatattttttcgaactctttct |
10289727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 9747568 - 9747748
Alignment:
| Q |
14 |
gatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatgataccatagttt |
113 |
Q |
| |
|
||||||| |||||||||| |||||| ||||||||| |||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9747568 |
gatactgctgtgccacaa-gttttccgagacatcagctctggtctaaatggtacgatagaattcttaagtttcaagcattgagcaatgataccatagttt |
9747666 |
T |
|
| Q |
114 |
tgattcaagaaaaaggtggttaatgttgttttattatgtttttacttcacacgcaattatatcgaccaataatattttttcaa |
196 |
Q |
| |
|
||||| ||| ||||| ||||||||||||||||||||||| |||||||| |||||| ||||||| |||||| ||||||||| |
|
|
| T |
9747667 |
tgatttaag-aaaagccggttaatgttgttttattatgttcttacttcatgtgcaattttatcgacaaataatcttttttcaa |
9747748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 10298091 - 10297933
Alignment:
| Q |
1 |
gtcagcaagaaacgatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaat |
100 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| | | |
|
|
| T |
10298091 |
gtcatcaagagacgatactgttgtgccacaa-gttttcagagacatcagctctggtttaaatggtacaataaaattcttaagt--------------att |
10298007 |
T |
|
| Q |
101 |
gataccatagttttgattcaagaaaaaggtggttaatgttgttttattatgtttttacttcacacgcaattatat |
175 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||||||||||||||||||||| ||||||||| | |||||||||| |
|
|
| T |
10298006 |
cataccatagttttgatacaa-aaaaaggcggttaatgttgttttattatgcttttacttcccgtgcaattatat |
10297933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 34694292 - 34694209
Alignment:
| Q |
41 |
agacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatgataccatagttttgattcaagaa |
124 |
Q |
| |
|
||||||||| |||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34694292 |
agacatcagctctggtttaaatggtaggatagaatttttaagtttcaagcattgagcaatgatactatagttttgattcaagaa |
34694209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 34716704 - 34716621
Alignment:
| Q |
41 |
agacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatgataccatagttttgattcaagaa |
124 |
Q |
| |
|
||||||||| |||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34716704 |
agacatcagctctggtttaaatggtaggatagaatttttaagtttcaagcattgagcaatgatactatagttttgattcaagaa |
34716621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 37744082 - 37744192
Alignment:
| Q |
14 |
gatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatgataccatagttt |
113 |
Q |
| |
|
|||||||||||||||||| |||| ||| |||| |||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
37744082 |
gatactgttgtgccacaag--tttccgagaaatcaactctggtttaaatggtaggatagaatttttaagtttcaagcattgagcaatgatactttagttt |
37744179 |
T |
|
| Q |
114 |
tgattcaagaaaa |
126 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
37744180 |
tgatttaagaaaa |
37744192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University