View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_205 (Length: 247)
Name: NF6868A_low_205
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_205 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 40856646 - 40856737
Alignment:
| Q |
133 |
gcgtgaagaaataagtttttaaattgattataccctggggatcctagaatattgctaaaaattacctactagcagaacatatcaaggaaagc |
224 |
Q |
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| T |
40856646 |
gcgtgaagaaataagtttttaaattgattataccctggggatcctagaatattgctaaaaattacctactagcagaacatatcaaggaaagc |
40856737 |
T |
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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 40856518 - 40856560
Alignment:
| Q |
8 |
tggacatcaaaggtacccatatccacattcgtcctatatggag |
50 |
Q |
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| T |
40856518 |
tggacatcaaaggtacccatatccacattcgtcctatatggag |
40856560 |
T |
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