View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6868A_low_206 (Length: 247)
Name: NF6868A_low_206
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_206 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 31700972 - 31700739
Alignment:
| Q |
7 |
gcagtatccattgactcca-atagcccatagtggtcactatagtctgctggtatttttgaatagagcatccataattcgtcgtcttttgaccatatgtag |
105 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31700972 |
gcagtatccattgactccacatagaccatagtggtcacaatagtctgctggtatttttgaataaagcatccataattcgtcgtcttttgaccatatgtag |
31700873 |
T |
|
| Q |
106 |
cgtggacgttcataactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctcttctttattgcagatga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31700872 |
cgtggacgttcataactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctcttctttattgcagatga |
31700773 |
T |
|
| Q |
206 |
agttgtgattgtaaacgttattaggcttcatatc |
239 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
31700772 |
agttgtaattgtaaacgttattaggcttcatatc |
31700739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 31723521 - 31723329
Alignment:
| Q |
11 |
tatccattgactcca-atagcccatagtggtcactatagtctgctggtatttttgaatagagcatccataattcgtcgtcttttgaccatatgtagcgtg |
109 |
Q |
| |
|
||||||||||||||| || | ||||| ||||||| || |||| |||||||| ||||||| | ||||| ||| |||||| |||||||||| ||| |||| |
|
|
| T |
31723521 |
tatccattgactccacatcgaccataatggtcacaatcgtctcctggtattcttgaataaatattccatgatttgtcgtcctttgaccatacgtatcgtg |
31723422 |
T |
|
| Q |
110 |
gacgttcataactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctcttctttattgcaga |
202 |
Q |
| |
|
|||| || | ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31723421 |
gacgatcgttactggtttggttaagtaccacttttgatatttgagtactatctttgatgttccatgtgtaataaacctcttctttattgcaga |
31723329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 31716276 - 31716084
Alignment:
| Q |
11 |
tatccattgactcca-atagcccatagtggtcactatagtctgctggtatttttgaatagagcatccataattcgtcgtcttttgaccatatgtagcgtg |
109 |
Q |
| |
|
||||||||||||||| || | ||||| ||||||| | |||| | |||||| ||||||| | | ||||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
31716276 |
tatccattgactccacattgaccataatggtcacaaatgtctccaggtattcttgaataaaccctccatgattcgacgtcttttgaccatacgtagcgtg |
31716177 |
T |
|
| Q |
110 |
gacgttcataactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctcttctttattgcaga |
202 |
Q |
| |
|
|||| || | |||||||||||||||||||| |||||||| | | |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31716176 |
gacgatctttactggtttggttaagtaccatttttgatacttgagaactatctttgatgttccatgtgtaataaacctcttctttattccaga |
31716084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 31722150 - 31721958
Alignment:
| Q |
11 |
tatccattgactcca-atagcccatagtggtcactatagtctgctggtatttttgaatagagcatccataattcgtcgtcttttgaccatatgtagcgtg |
109 |
Q |
| |
|
||||||||||||||| || | ||||| ||||||| | |||| | |||||| ||||||| | | ||||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
31722150 |
tatccattgactccacattgaccataatggtcacaaatgtctccaggtattcttgaataaaccctccatgattcgacgtcttttgaccatacgtagcgtg |
31722051 |
T |
|
| Q |
110 |
gacgttcataactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctcttctttattgcaga |
202 |
Q |
| |
|
|||| || | |||||||||||||||||||| |||||||| | | |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31722050 |
gacgatctttactggtttggttaagtaccatttttgatacttgagaactatctttgatgttccatgtgtaataaacctcttctttattccaga |
31721958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University