View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_208 (Length: 247)

Name: NF6868A_low_208
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_208
NF6868A_low_208
[»] chr7 (5 HSPs)
chr7 (1-215)||(34317739-34317953)
chr7 (48-134)||(37425000-37425086)
chr7 (48-134)||(37417468-37417554)
chr7 (49-148)||(45249161-45249260)
chr7 (87-131)||(33737246-33737290)
[»] chr8 (1 HSPs)
chr8 (51-135)||(7872062-7872146)
[»] chr4 (2 HSPs)
chr4 (48-128)||(50891041-50891121)
chr4 (64-114)||(19260247-19260297)
[»] chr6 (1 HSPs)
chr6 (46-178)||(10057309-10057442)
[»] chr3 (2 HSPs)
chr3 (49-135)||(43672378-43672464)
chr3 (81-133)||(20272166-20272218)
[»] chr1 (2 HSPs)
chr1 (48-148)||(30029377-30029477)
chr1 (49-135)||(716415-716501)
[»] chr2 (1 HSPs)
chr2 (92-131)||(7863465-7863504)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 34317953 - 34317739
Alignment:
Q  1 ggattagaagttcataaagatcaaattcaccaatattcaacaaaaaattgttaggaacctaagaattgaattgaaaataatgaactattttattgaaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34317953 ggattagaagttcataaagatcaaattcaccaatattcatcaaaaaattgttaggaacctaagaattgaattgaaaataatgaactattttattgaaaga 34317854  T
Q  101 ttgagaaaggataaaggagaataggagagaaatctttctccaagggttctcctttcacagcagggtcactactctattcacacaatacttgatgattgat 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  34317853 ttgagaaaggataaaggagaataggagagaaatctctctccaagggttttcctttcacagcagagtcactactcaattcacacaatacttgatgattgat 34317754  T
Q  201 ctccatcgttgtatt 215  Q
    |||||||||||||||    
T  34317753 ctccatcgttgtatt 34317739  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 37425086 - 37425000
Alignment:
Q  48 ttgttaggaacctaagaattgaattgaaaataatgaactattttattgaaagattgagaaaggataaaggagaataggagagaaatc 134  Q
    |||||||||||| ||||||||||| ||||| ||| ||| ||||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  37425086 ttgttaggaaccaaagaattgaatggaaaagaataaacaattttattgaaagattgagaacggacaaaagagaataggagagaaatc 37425000  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 37417554 - 37417468
Alignment:
Q  48 ttgttaggaacctaagaattgaattgaaaataatgaactattttattgaaagattgagaaaggataaaggagaataggagagaaatc 134  Q
    |||||||||||| ||||||||||| ||||| ||| ||| ||||||||||||||||| ||| ||| ||| ||||||||||||||||||    
T  37417554 ttgttaggaaccaaagaattgaatggaaaagaataaacaattttattgaaagattgcgaacggacaaaagagaataggagagaaatc 37417468  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 45249161 - 45249260
Alignment:
Q  49 tgttaggaacctaagaattgaattgaaaataatgaactattttattgaaagattgagaaaggataaaggagaataggagagaaatct-ttctccaagggt 147  Q
    |||||||| || |||||||| |||||||| |||||||||||||||| ||||  ||||||||||||||  ||||| ||||| |||||| | ||||||||||    
T  45249161 tgttaggaccccaagaattggattgaaaagaatgaactattttattaaaaggctgagaaaggataaaaaagaatgggaga-aaatctatcctccaagggt 45249259  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 33737246 - 33737290
Alignment:
Q  87 attttattgaaagattgagaaaggataaaggagaataggagagaa 131  Q
    |||||||||||||||||| |||||||||| || ||||||||||||    
T  33737246 attttattgaaagattgataaaggataaaagataataggagagaa 33737290  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 135
Target Start/End: Complemental strand, 7872146 - 7872062
Alignment:
Q  51 ttaggaacctaagaattgaattgaaaataatgaactattttattgaaagattgagaaaggataaaggagaataggagagaaatct 135  Q
    ||||||||| ||| ||||||||||||| ||||||| |||||||||||| ||||| |||||||||| ||||||| |||||||||||    
T  7872146 ttaggaacccaagtattgaattgaaaagaatgaacaattttattgaaatattgataaaggataaatgagaatatgagagaaatct 7872062  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 50891121 - 50891041
Alignment:
Q  48 ttgttaggaacctaagaattgaattgaaaataatgaactattttattgaaagattgagaaaggataaaggagaataggaga 128  Q
    |||||||||||| |||| || ||||||||| ||||| | |||||||||||||||||||||||||||||||||||| |||||    
T  50891121 ttgttaggaacccaagagttaaattgaaaaaaatgagcaattttattgaaagattgagaaaggataaaggagaatgggaga 50891041  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 19260247 - 19260297
Alignment:
Q  64 aattgaattgaaaataatgaactattttattgaaagattgagaaaggataa 114  Q
    |||| ||||||||| || | |||||||||||||||||||||||||| ||||    
T  19260247 aattaaattgaaaagaaaggactattttattgaaagattgagaaagaataa 19260297  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 178
Target Start/End: Complemental strand, 10057442 - 10057309
Alignment:
Q  46 aattgttaggaacctaagaattgaattgaaaataatgaactattttattgaaagattgagaaaggataaaggagaataggagagaaatct-ttctccaag 144  Q
    |||||||||||||| || ||||||  |||||  || |||| ||||||||||||||||||||||||| ||| ||||||||||||||  ||| | |||||||    
T  10057442 aattgttaggaaccaaaaaattgatatgaaaggaacgaacaattttattgaaagattgagaaaggacaaacgagaataggagagatttctctcctccaag 10057343  T
Q  145 ggttctcctttcacagcagggtcactactctatt 178  Q
    ||||  || ||| ||  || ||||||||||||||    
T  10057342 ggtttacccttcgcaatagcgtcactactctatt 10057309  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 43672464 - 43672378
Alignment:
Q  49 tgttaggaacctaagaattgaattgaaaataatgaactattttattgaaagattgagaaaggataaaggagaataggagagaaatct 135  Q
    ||||||||||| ||||||||||| ||||| |||| || |||||||||||||| |||| || |||||| || || || ||||||||||    
T  43672464 tgttaggaacccaagaattgaatggaaaagaatggacaattttattgaaagactgagtaatgataaaagataacagaagagaaatct 43672378  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 20272166 - 20272218
Alignment:
Q  81 tgaactattttattgaaagattgagaaaggataaaggagaataggagagaaat 133  Q
    ||||| ||||||||||||| | ||||||||||||| |||||||  ||||||||    
T  20272166 tgaacaattttattgaaaggtcgagaaaggataaaagagaatataagagaaat 20272218  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 30029477 - 30029377
Alignment:
Q  48 ttgttaggaacctaagaattgaattgaaaataatgaactattttattgaaagattgagaaaggataaaggagaataggagagaaatct-ttctccaaggg 146  Q
    |||||||||||| | ||||||||||||||| | ||||   ||||||| ||||| ||||||||||||||  |||||| ||||||||||| | |||||||||    
T  30029477 ttgttaggaaccca-gaattgaattgaaaagagtgaatagttttatttaaagaatgagaaaggataaaatagaatatgagagaaatctctcctccaaggg 30029379  T
Q  147 tt 148  Q
    ||    
T  30029378 tt 30029377  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 716501 - 716415
Alignment:
Q  49 tgttaggaacctaagaattgaattgaaaataatgaactattttattgaaagattgagaaaggataaaggagaataggagagaaatct 135  Q
    |||||||||||  ||||||  ||||||||  | |||| ||||||||||||||||||| ||  ||||| |||||||||||| ||||||    
T  716501 tgttaggaacccgagaatttgattgaaaactacgaacaattttattgaaagattgagcaataataaaagagaataggagaaaaatct 716415  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 7863504 - 7863465
Alignment:
Q  92 attgaaagattgagaaaggataaaggagaataggagagaa 131  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  7863504 attgaaagattgagaaaggataaatgagaataggagagaa 7863465  T

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