View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_213 (Length: 246)
Name: NF6868A_low_213
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_213 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 44611611 - 44611393
Alignment:
| Q |
15 |
aagaatatgaagccatcgaaagctgtaaacctgaaaaatagtagcatcagaagccaaaatcctaggatgatctcaagaccaaaaagacagcagagcacaa |
114 |
Q |
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| T |
44611611 |
aagaaaatgaaaccatcgaaagctgtaaacctgaaaaacagtagcatcagaagccaaaatcctaggaagatctcaagaccaaaaagacagcagagcacaa |
44611512 |
T |
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| Q |
115 |
accaacagcagcagaaacaaatcactgaacctataatccactaaacctaagaaatattcattttatctttatattcaacaaacatattcttcgcatattc |
214 |
Q |
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| T |
44611511 |
accaacagcagcagaaacaaatcactgaacctataatccactaaacctaagaaatattcattttatctttatattcaacaaacatattcttcgcatatgc |
44611412 |
T |
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| Q |
215 |
gtcacgaaatgatgtccat |
233 |
Q |
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| T |
44611411 |
gtcacgaaatgttgtccat |
44611393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 13146213 - 13146114
Alignment:
| Q |
34 |
aagctgtaaacctgaaaaatagtagcatcagaagccaaaatcctaggatgatctcaagaccaaaaagacagcagagcacaaaccaacagcagcagaaaca |
133 |
Q |
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| T |
13146213 |
aagctgtaaacctgaaaaacaatagcatcagaagccaaaaccctaggaagatctcaagaccaaaaagacagcagagcacaaaccaatagcagcataaaca |
13146114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 26379569 - 26379661
Alignment:
| Q |
41 |
aaacctgaaaaatagtagcatcagaagccaaaatcctaggatgatctcaagaccaaaaagacagcagagcacaaaccaacagcagcagaaaca |
133 |
Q |
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| T |
26379569 |
aaacctgaaaaatagtagcatcagaagccaaaaccctagaaagatctcaagaccaaaaaaacagcagagcacaaaccaataacagtagaaaca |
26379661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 22247058 - 22247022
Alignment:
| Q |
38 |
tgtaaacctgaaaaatagtagcatcagaagccaaaat |
74 |
Q |
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|||||||||||||||||||||||||| |||||||||| |
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| T |
22247058 |
tgtaaacctgaaaaatagtagcatcaaaagccaaaat |
22247022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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