View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_217 (Length: 245)
Name: NF6868A_low_217
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_217 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 37181412 - 37181187
Alignment:
| Q |
1 |
gagctaaggactgtatttgtttgtatagagagaaattggttttggatttgatgagaaggaaaggggtagtggatggtcttatatagagtgagagagattt |
100 |
Q |
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| T |
37181412 |
gagctaaggactgtatttgt----atagagagaatttgcttttggatttgatgagaaggaaaggggtagtggatggtcttatatagagtgagagagattt |
37181317 |
T |
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| Q |
101 |
gaaggagagttgtttggagaactataagagcttttgcaattttaagttagttcaacttcctgtgtttcactttgacaaaagcatttggttgcctacatta |
200 |
Q |
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| T |
37181316 |
gaaggagagttgtttggagaactataagagcttttgcaattttaagttagttcaacttcctgtgtttcactttgacaaaagcatttggttgcctacatta |
37181217 |
T |
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| Q |
201 |
gttataaccccaaaatagtccaatgtgatg |
230 |
Q |
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| T |
37181216 |
gttataaccccaaaatagtccaatgtgatg |
37181187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 37180349 - 37180512
Alignment:
| Q |
20 |
tttgtatagagagaaattggttttggatttgatgagaaggaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttgg-a |
118 |
Q |
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| T |
37180349 |
tttgtatagagagaatttgatttgggatttgatgagaagcatagggatagtgggtggtcttatatagattgagatagatttgaaggagggtagttcggaa |
37180448 |
T |
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| Q |
119 |
gaactat-aagagcttttgcaattttaagttagttcaacttcctgtgtttcactttgacaaaag |
181 |
Q |
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| T |
37180449 |
gaaccatcaagagcttttgcaatttttagttagttcaacttattgggtttcactttgacaaaag |
37180512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 37189505 - 37189365
Alignment:
| Q |
20 |
tttgtatagagagaaattggttttggatttgatgagaaggaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttgga- |
118 |
Q |
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||||||||||||||| ||| ||| ||||||||||||||| | |||| |||||| || ||||||||||| ||||||||||||||||||| || ||| ||| |
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| T |
37189505 |
tttgtatagagagaatttgatttgggatttgatgagaagcatagggatagtgggtgatcttatatagattgagagagatttgaaggagggtagttcggat |
37189406 |
T |
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| Q |
119 |
gaactat-aagagcttttgcaattttaagttagttcaactt |
158 |
Q |
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| T |
37189405 |
gaaccatcaagagcttttgcaatttttagttagttcaactt |
37189365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 186
Target Start/End: Original strand, 38704418 - 38704569
Alignment:
| Q |
35 |
attggttttggatttgatgagaaggaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttggagaactataagagcttt |
134 |
Q |
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|||| |||||||||| |||| ||| |||||| ||||||||||| ||||||||||| ||||||||||| | || | |||||||| |||| ||| || |
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| T |
38704418 |
attgcttttggattttatgaaaagcaaagggatagtggatggttttatatagagtagaagagatttgaatcaaggtagcttggagaataataaaagcatt |
38704517 |
T |
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| Q |
135 |
tgcaattttaagttagttcaacttcctgtgtttcactttgacaaaagcattt |
186 |
Q |
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| T |
38704518 |
tgcaatcttaagttacttcaacttcctgtgttttactttcacaaaaccattt |
38704569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 37188021 - 37188197
Alignment:
| Q |
20 |
tttgtatagagagaaattggttttggatttgatgagaaggaaaggggtagtggatggtct--tatatagagtgagagagatttgaaggagagttgtttgg |
117 |
Q |
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|||||||| |||||| ||| ||| ||||| |||||||||||||| |||||||||||||| |||||||||| || ||||||||||||| || |||||| |
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| T |
37188021 |
tttgtatatagagaatttgctttgagattttatgagaaggaaaggagtagtggatggtcttatatatagagtaagcaagatttgaaggagggtagtttgg |
37188120 |
T |
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| Q |
118 |
agaacta-taagagcttttgcaatt--------ttaagttagttcaacttcctgtgtttcactttgacaaaagcatt |
185 |
Q |
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||||| | || |||||||||||||| || |||| ||| |||||||| |||||||||||||||||| |||| |
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| T |
37188121 |
agaacaactacgagcttttgcaatttttatttctttagtttgtttaacttcctctgtttcactttgacaaaatcatt |
37188197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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