View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_220 (Length: 244)

Name: NF6868A_low_220
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_220
NF6868A_low_220
[»] chr5 (12 HSPs)
chr5 (10-244)||(39031603-39031836)
chr5 (80-147)||(39753318-39753385)
chr5 (75-147)||(21067619-21067691)
chr5 (82-148)||(19187150-19187216)
chr5 (75-148)||(36603696-36603769)
chr5 (76-144)||(38282501-38282569)
chr5 (100-147)||(14122929-14122976)
chr5 (72-144)||(28988394-28988468)
chr5 (80-144)||(1179956-1180020)
chr5 (80-147)||(24233184-24233251)
chr5 (75-144)||(36974077-36974146)
chr5 (80-148)||(5984823-5984891)
[»] scaffold0272 (1 HSPs)
scaffold0272 (50-148)||(6085-6183)
[»] chr8 (4 HSPs)
chr8 (58-147)||(40995823-40995912)
chr8 (76-144)||(7222851-7222917)
chr8 (110-150)||(6108601-6108641)
chr8 (85-150)||(12000140-12000205)
[»] chr4 (7 HSPs)
chr4 (56-144)||(27756454-27756542)
chr4 (72-147)||(19328821-19328896)
chr4 (86-144)||(3427880-3427938)
chr4 (86-150)||(25474651-25474715)
chr4 (102-144)||(2652941-2652983)
chr4 (76-144)||(20032920-20032989)
chr4 (72-144)||(3913652-3913724)
[»] chr3 (5 HSPs)
chr3 (80-147)||(1294908-1294975)
chr3 (50-147)||(8936082-8936179)
chr3 (86-147)||(42388754-42388815)
chr3 (76-147)||(43178606-43178677)
chr3 (76-144)||(28957720-28957788)
[»] chr1 (6 HSPs)
chr1 (50-148)||(19940599-19940697)
chr1 (50-147)||(32022616-32022713)
chr1 (82-148)||(1408629-1408695)
chr1 (58-148)||(46289802-46289892)
chr1 (83-144)||(32503012-32503073)
chr1 (99-147)||(34663137-34663185)
[»] chr2 (4 HSPs)
chr2 (80-148)||(9521065-9521133)
chr2 (50-140)||(27322727-27322817)
chr2 (74-147)||(16634421-16634494)
chr2 (72-147)||(9116405-9116480)
[»] chr7 (4 HSPs)
chr7 (50-147)||(30486952-30487049)
chr7 (56-148)||(28710391-28710483)
chr7 (80-144)||(15972139-15972203)
chr7 (80-147)||(47903888-47903953)
[»] chr6 (1 HSPs)
chr6 (91-143)||(6253518-6253570)


Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 39031603 - 39031836
Alignment:
Q  10 atgaaatgcccctatcaattattggataatgttaaccgcaggcaccggttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactat 109  Q
    |||||||| ||| |||||||||||  ||||||||||||| | ||| | |||| || ||||| ||||||||||||||||| |||||||||||||||| |||    
T  39031603 atgaaatgtcccgatcaattattgagtaatgttaaccgcggacactgattaaggagttaaatgtggtaaatattacattaaaatttatgctgtcaattat 39031702  T
Q  110 tcaaaaacataaaaagtattactttcattttaaaactttatcnnnnnnnnnnnnnnaaccggtgtccatgacccttctttaattaagctcaggggtacgt 209  Q
    || |||||||||||| ||||||||||||||||||||||| ||              |||| | | |||||||||||||||||||||||||||||| ||||    
T  39031703 tc-aaaacataaaaaatattactttcattttaaaactttctctttttagtttttttaaccagggcccatgacccttctttaattaagctcaggggaacgt 39031801  T
Q  210 agtatttaaccgtgcttatagcattatgtaaaaga 244  Q
    |||||||||||||||||| ||||||||||||||||    
T  39031802 agtatttaaccgtgcttaaagcattatgtaaaaga 39031836  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 39753385 - 39753318
Alignment:
Q  80 tattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 147  Q
    ||||||||||||| || ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  39753385 tattacattgaaacttgtgctgtcaactcttcaaaagcataaaaagtattactttcattttaaaactt 39753318  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 21067619 - 21067691
Alignment:
Q  75 gtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 147  Q
    |||| ||||||||||||| || || ||||| || ||||||| ||||||||||| |||||||||||||||||||    
T  21067619 gtaagtattacattgaaacttgtgttgtcatctcttcaaaagcataaaaagtagtactttcattttaaaactt 21067691  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 19187150 - 19187216
Alignment:
Q  82 ttacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaacttt 148  Q
    |||||||||||||| || |||||||| ||||||| |||||||||| ||  |||||||||||||||||    
T  19187150 ttacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttgttttcattttaaaacttt 19187216  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 36603769 - 36603696
Alignment:
Q  75 gtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaacttt 148  Q
    |||| |||| ||||| || || || |||||||| |||||||||||||||||| | |||||||||||||||||||    
T  36603769 gtaagtattgcattggaacttgtgttgtcaactcttcaaaaacataaaaagtgtcactttcattttaaaacttt 36603696  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 38282501 - 38282569
Alignment:
Q  76 taaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 144  Q
    ||||||||||||| |||||| || |||||||| || ||||| ||||||||| ||| |||||||||||||    
T  38282501 taaatattacattaaaatttgtgttgtcaactctttaaaaatataaaaagtgttattttcattttaaaa 38282569  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 14122929 - 14122976
Alignment:
Q  100 tgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 147  Q
    |||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  14122929 tgtcaactattcaaaagcatataaagtgttactttcattttaaaactt 14122976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 28988468 - 28988394
Alignment:
Q  72 gtggtaaatattacattgaaatttatgctgtcaactattcaaaaacat--aaaaagtattactttcattttaaaa 144  Q
    ||||||| |||||||||||||||| ||  ||||||| ||||||| |||  ||||||| |||||||||||||||||    
T  28988468 gtggtaattattacattgaaatttgtgtcgtcaacttttcaaaagcataaaaaaagtgttactttcattttaaaa 28988394  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 1179956 - 1180020
Alignment:
Q  80 tattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 144  Q
    ||||||||||||| ||||| ||||||||  | ||||||||||||||| ||| ||| |||||||||    
T  1179956 tattacattgaaacttatgttgtcaacttctaaaaaacataaaaagtgttatttttattttaaaa 1180020  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 24233184 - 24233251
Alignment:
Q  80 tattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 147  Q
    |||| ||||| || || ||||||||||| |||||||| ||||||||| |||||||||| || ||||||    
T  24233184 tattgcattggaacttgtgctgtcaacttttcaaaaatataaaaagtgttactttcatcttcaaactt 24233251  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 36974146 - 36974077
Alignment:
Q  75 gtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 144  Q
    ||||||||| ||||  || || || |||||||| ||||||||||||||| || ||| |||||||||||||    
T  36974146 gtaaatattgcattagaacttgtgttgtcaactcttcaaaaacataaaatgtgttattttcattttaaaa 36974077  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 5984891 - 5984823
Alignment:
Q  80 tattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaacttt 148  Q
    ||||||||||||| || ||| ||||||| ||||||||  || ||| ||||| ||||| |||||||||||    
T  5984891 tattacattgaaaattgtgcagtcaacttttcaaaaatttagaaaatattattttcaatttaaaacttt 5984823  T

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Target: scaffold0272 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 6085 - 6183
Alignment:
Q  50 ggcaccggttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaacttt 148  Q
    ||||| |||||| || | ||| || |||| |||| ||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  6085 ggcactggttaaggagtcaaatgtagtaagtattgcattggaatttatgctgtcaacttttcaaaaacataaaaagtgttactttcattttaaaacttt 6183  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 40995912 - 40995823
Alignment:
Q  58 ttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 147  Q
    ||||||||| ||| || |||| |||||||||||||||| || |||||||| |||||||||||||||||| ||| ||||||||||||||||    
T  40995912 ttaaagaatcaaatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaactt 40995823  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 7222917 - 7222851
Alignment:
Q  76 taaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 144  Q
    |||||||||||||||||||| ||||||  |||||||||||||||||||||| ||||||| |||||||||    
T  7222917 taaatattacattgaaatttgtgctgt--actattcaaaaacataaaaagtgttacttttattttaaaa 7222851  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 6108601 - 6108641
Alignment:
Q  110 tcaaaaacataaaaagtattactttcattttaaaactttat 150  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  6108601 tcaaaaacataaaaagtattattttcattttaaaattttat 6108641  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 12000205 - 12000140
Alignment:
Q  85 cattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactttat 150  Q
    ||||| ||||| ||||||||||   |||||| |||||||| ||||| ||||| |||||||||||||    
T  12000205 cattggaatttgtgctgtcaacatctcaaaagcataaaaaatattattttcactttaaaactttat 12000140  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 27756454 - 27756542
Alignment:
Q  56 ggttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 144  Q
    |||||| |||| ||| || |||| |||||||||||||||| || |||||||| ||||||| |||||||||| ||| |||||||||||||    
T  27756454 ggttaaggaatcaaatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttattttcattttaaaa 27756542  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 19328821 - 19328896
Alignment:
Q  72 gtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 147  Q
    ||||||| |||||||||| || || |||| |||||| |||||||  ||||||||| ||||||||||||||||||||    
T  19328821 gtggtaagtattacattggaacttgtgctatcaactcttcaaaagtataaaaagtgttactttcattttaaaactt 19328896  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 3427880 - 3427938
Alignment:
Q  86 attgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 144  Q
    ||||||| || || |||||||| |||||||||||||||||| ||| |||||||||||||    
T  3427880 attgaaacttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaa 3427938  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 25474715 - 25474651
Alignment:
Q  86 attgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactttat 150  Q
    |||||||||| || |||||||| ||||||| |||||||| | ||| ||||||||||||| |||||    
T  25474715 attgaaatttgtgttgtcaactcttcaaaagcataaaaaatgttattttcattttaaaattttat 25474651  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 2652983 - 2652941
Alignment:
Q  102 tcaactattcaaaaacataaaaagtattactttcattttaaaa 144  Q
    |||||| |||||||||||||||||||| | |||||||||||||    
T  2652983 tcaactcttcaaaaacataaaaagtatcattttcattttaaaa 2652941  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 20032920 - 20032989
Alignment:
Q  76 taaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattact-ttcattttaaaa 144  Q
    |||||||||||||| || || |  |||||||| |||||||||||||||||| ||| | ||||||||||||    
T  20032920 taaatattacattggaacttgtattgtcaactcttcaaaaacataaaaagtgttattcttcattttaaaa 20032989  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 3913652 - 3913724
Alignment:
Q  72 gtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 144  Q
    ||||||| |||||| ||| || || || ||| |||| |||||||  ||||||||| |||||||||||||||||    
T  3913652 gtggtaagtattacgttggaacttgtgttgttaactcttcaaaagtataaaaagtgttactttcattttaaaa 3913724  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 1294975 - 1294908
Alignment:
Q  80 tattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 147  Q
    |||||||||||||||| |||||||| || |||| ||||||||||| | ||||||||||||||||||||    
T  1294975 tattacattgaaatttgtgctgtcagctcttcataaacataaaaaatgttactttcattttaaaactt 1294908  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 8936179 - 8936082
Alignment:
Q  50 ggcaccggttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 147  Q
    ||||| |||||| || ||||| |||| || ||||||||||||| || ||||||||||  || |||| |||||||||| ||||||| ||||||||||||    
T  8936179 ggcactggttaaggagttaaatgtggcaagtattacattgaaacttgtgctgtcaacccttgaaaagcataaaaagtgttacttttattttaaaactt 8936082  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 42388754 - 42388815
Alignment:
Q  86 attgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 147  Q
    |||| ||||| ||||||||||| |||||||||||||||||| ||| |||||| |||||||||    
T  42388754 attggaatttgtgctgtcaacttttcaaaaacataaaaagtgttattttcatcttaaaactt 42388815  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 43178606 - 43178677
Alignment:
Q  76 taaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 147  Q
    |||||||||||||||||||| | ||||||||| || ||||  ||||||| | ||||||| ||||||||||||    
T  43178606 taaatattacattgaaatttgtactgtcaacttttgaaaagtataaaaaatgttacttttattttaaaactt 43178677  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 28957788 - 28957720
Alignment:
Q  76 taaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 144  Q
    ||||||||||||| ||||| ||  |||||||| ||| |||| ||||||||| ||| ||| |||||||||    
T  28957788 taaatattacattaaaattcatattgtcaactcttcgaaaatataaaaagtgttatttttattttaaaa 28957720  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 19940697 - 19940599
Alignment:
Q  50 ggcaccggttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaacttt 148  Q
    ||||| |||||| |||| ||| || |||| |||| |||||||| ||||||||||||||  |||||| |||||||||| ||| ||||| |||||||||||    
T  19940697 ggcactggttaaggaatcaaatgtagtaagtattgcattgaaacttatgctgtcaactcctcaaaagcataaaaagtgttattttcactttaaaacttt 19940599  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 32022713 - 32022616
Alignment:
Q  50 ggcaccggttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 147  Q
    ||||| |||||| || | ||| ||||||| ||||||||||||| || | ||||||||| || ||||  ||||||||||||||||| ||||||||||||    
T  32022713 ggcactggttaaggagtcaaatgtggtaagtattacattgaaaattgtactgtcaactttttaaaagtataaaaagtattacttttattttaaaactt 32022616  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 1408629 - 1408695
Alignment:
Q  82 ttacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaacttt 148  Q
    |||||||| || || || |||||||| |||||||||||||||||| ||| |||||||||||||||||    
T  1408629 ttacattggaacttgtgttgtcaactcttcaaaaacataaaaagttttattttcattttaaaacttt 1408695  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 46289892 - 46289802
Alignment:
Q  58 ttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaacttt 148  Q
    ||||||||| ||  || |||| |||| ||||| || || ||||||||||  |||||||||||||||||| ||| ||||| |||||||||||    
T  46289892 ttaaagaatcaagtgtagtaagtattgcattgtaacttttgctgtcaacacttcaaaaacataaaaagtgttattttcactttaaaacttt 46289802  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 32503012 - 32503073
Alignment:
Q  83 tacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 144  Q
    ||||||| ||||| ||||||||| | || ||||| ||||||||||||||||| |||||||||    
T  32503012 tacattggaatttgtgctgtcaatttttaaaaaatataaaaagtattacttttattttaaaa 32503073  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 34663137 - 34663185
Alignment:
Q  99 ctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 147  Q
    ||||||||| |||||||  ||||||||| ||||||||||||||||||||    
T  34663137 ctgtcaacttttcaaaagtataaaaagtgttactttcattttaaaactt 34663185  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 9521133 - 9521065
Alignment:
Q  80 tattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaacttt 148  Q
    ||||||||||||| || ||||||||||| || ||||  ||||||||| ||||||| |||||||||||||    
T  9521133 tattacattgaaacttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaacttt 9521065  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 27322727 - 27322817
Alignment:
Q  50 ggcaccggttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcatttt 140  Q
    ||||| |||||| || | ||| ||||||| |||| ||||| || || ||||||||||| || |||| |||||||||||||||||| |||||    
T  27322727 ggcactggttaaggagtcaaatgtggtaagtattgcattggaacttgtgctgtcaactcttgaaaagcataaaaagtattacttttatttt 27322817  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 16634421 - 16634494
Alignment:
Q  74 ggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 147  Q
    ||||| |||||||||| ||||| ||||||||||| ||||||| |||||||| | || |||  ||||||||||||    
T  16634421 ggtaagtattacattggaatttgtgctgtcaacttttcaaaagcataaaaaatgttgcttctattttaaaactt 16634494  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 9116480 - 9116405
Alignment:
Q  72 gtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 147  Q
    |||||||||||| ||||| || || ||||||||||| || ||||  ||| ||||| ||||||| ||||||||||||    
T  9116480 gtggtaaatattgcattggaacttgtgctgtcaacttttgaaaagtatacaaagtgttacttttattttaaaactt 9116405  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 30487049 - 30486952
Alignment:
Q  50 ggcaccggttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 147  Q
    ||||| |||||| || | ||| || |||| |||| ||||||||||| ||| ||||||| || ||||| ||||||| | ||||||| ||||||||||||    
T  30487049 ggcactggttaaggagtcaaatgtcgtaagtattgcattgaaatttgtgccgtcaacttttaaaaaatataaaaaatgttacttttattttaaaactt 30486952  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 28710483 - 28710391
Alignment:
Q  56 ggttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaacttt 148  Q
    |||||| |||| ||| || |||| |||||||||| ||||| |||||  ||||  ||||||||||||||| | ||| ||||| |||||||||||    
T  28710483 ggttaaggaatcaaatgtagtaagtattacattggaatttgtgctgctaactcctcaaaaacataaaaattgttattttcactttaaaacttt 28710391  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 15972203 - 15972139
Alignment:
Q  80 tattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 144  Q
    ||||||||||||| || || |||||| |  ||||||| ||||||||||||| ||||| |||||||    
T  15972203 tattacattgaaacttgtgttgtcaaatcctcaaaaatataaaaagtattattttcactttaaaa 15972139  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 47903953 - 47903888
Alignment:
Q  80 tattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 147  Q
    |||||||||| ||||| || ||||||||  ||||||||||  ||||| ||| ||||||||||||||||    
T  47903953 tattacattggaatttgtgttgtcaactcctcaaaaacat--aaagtgttattttcattttaaaactt 47903888  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 6253518 - 6253570
Alignment:
Q  91 aatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaa 143  Q
    ||||| |||||||||||| ||||||  ||||||||||||| ||||| ||||||    
T  6253518 aatttgtgctgtcaactactcaaaagaataaaaagtattattttcactttaaa 6253570  T

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