View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_222 (Length: 244)
Name: NF6868A_low_222
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_222 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 22043901 - 22044114
Alignment:
| Q |
20 |
aataggattggatagaagtaattttgttataggtttcatctgaaagatcaagtatattgtaaaagtcatgaacttgttgtaacataaagtgatgtatata |
119 |
Q |
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| T |
22043901 |
aataggattggatagaagtaattttgttataggttccatctgaaagatcaagtatattgtaaaagtcatgaacttgttgtaacataaagtgatgtatata |
22044000 |
T |
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| Q |
120 |
tagatataaatttatcattcattacatatgtttcattgaataaaataataattggttggatagttgtataaagatatttttccagaaatagcgaagacat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
22044001 |
tagatataaatttatcattcattacatatgtttcattgaataaaataataattggttggatagttgtataaagatatttttccaaaaatagcaaagacat |
22044100 |
T |
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| Q |
220 |
ttaaaataggaata |
233 |
Q |
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|||||||||||||| |
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| T |
22044101 |
ttaaaataggaata |
22044114 |
T |
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