View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_224 (Length: 244)
Name: NF6868A_low_224
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_224 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 42748372 - 42748610
Alignment:
| Q |
6 |
ggacatcaatacacacttacacatcgacactagtaataatctgagaaaacagaatagttgaatttaatcacatgtgttggtgtcagacatcttacacgcc |
105 |
Q |
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| T |
42748372 |
ggacatcaatacacacttacacatcgacactagtaataatctgagaaaacagaatagttgaatttaatcacatgtgttggtgtcagacatcttacacgcc |
42748471 |
T |
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| Q |
106 |
atcaattagaagcgttggtgctacataggtctctacgttgccgacttgcaggctgcagcattgttatctatttgaatttgactatgcaataaaagctgtc |
205 |
Q |
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| T |
42748472 |
atcaattagaagcgttggtgctacataggtctctacgttgcagacttgcaggctgcagcattgttatgtatttgaatttgaatatgcaataaaagctgtc |
42748571 |
T |
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| Q |
206 |
atattgggaataatattgatgcttttaatttgaaatcta |
244 |
Q |
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| T |
42748572 |
atattgggaataatattgatgcttttaatttgaaatcta |
42748610 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 10038488 - 10038440
Alignment:
| Q |
46 |
ctgagaaaacagaatagttgaatttaatcacatgtgttggtgtcagaca |
94 |
Q |
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| T |
10038488 |
ctgagaaaatagaataattgaatataatcacatgtgttggtgtccgaca |
10038440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 3451854 - 3451913
Alignment:
| Q |
30 |
cgacactagtaataatctgagaaaacagaatagttgaatttaatcacatgtgttggtgtc |
89 |
Q |
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| T |
3451854 |
cgacactgataataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtc |
3451913 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 28322234 - 28322298
Alignment:
| Q |
24 |
acacatcgacactagtaataatctgagaaaacagaatagttgaatttaatcacatgtgttggtgt |
88 |
Q |
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|||| ||||||||||| ||||| |||||||| | || |||||| ||||||||||||||||||| |
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| T |
28322234 |
acacgtcgacactagtgataatttgagaaaatgaattaattgaatgtaatcacatgtgttggtgt |
28322298 |
T |
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