View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_23 (Length: 430)
Name: NF6868A_low_23
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 34144443 - 34144867
Alignment:
| Q |
1 |
gttcctcctgcatcaagtgagccactgctgcatctacttctctttttcctctttcttttatcagaaaaatcaatcctttcacacatagactggtcataga |
100 |
Q |
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| T |
34144443 |
gttcctcctgcatcaagtgagccactgctgcatctacttctctttttcctctttcttttgtcagaaaaatcaatcctttcacacatagactggtcataga |
34144542 |
T |
|
| Q |
101 |
tcttgacatcaaatttatacttgttaatgcagttgaatacaagcaaatctccaatttcaagcttgtgagccgatgagaaatcaccccatcctttcttaaa |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34144543 |
tcttgacatcaaagttatacttgttaatgcagttgaatacaagcaaatctccaatttcaagcttgtgagccgatgagaaatcatcccatcctttcttaaa |
34144642 |
T |
|
| Q |
201 |
agcaaaagaaccatcaacttctgaaattgttataacccatctcttaccggttgaatcctcgagatcgattttctgatcaaccaacaatgacatagtagga |
300 |
Q |
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|||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
34144643 |
agcaaaagaaccatcaacttctgatactgttatagcccatctcttaccggttgaatcctcaagattgattttctgatcaaccaacaatgacatagtagga |
34144742 |
T |
|
| Q |
301 |
tttaacttagaaggaagatcctgcagtcagtttaaaaagacgttgaaaatatgcagcatcatcataaatacaaactcaaaaatagattcacattttgcaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34144743 |
tttaacttagaaggaagatcctgcagtcagtttaaaaagatgttaaaaatatgcagcatcatcataaatacaaactcaaaaacagattcacattttgcaa |
34144842 |
T |
|
| Q |
401 |
gaagatctgtaacatgcatgttctt |
425 |
Q |
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| T |
34144843 |
gaagatctgtaacatgcatgttctt |
34144867 |
T |
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