View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_230 (Length: 243)
Name: NF6868A_low_230
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_230 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1531216 - 1530978
Alignment:
| Q |
1 |
gagagagagcaataatccaaatgatagaaacaattaaagcagtaataggtgagatgataactatcaataaaacacatatacatgcaagcataaaaatttg |
100 |
Q |
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| T |
1531216 |
gagagagagcaataatccaaatgatagaaacaattaaagcagtaataggtgatatgataactatcaataaaacacatatacatgcaagcataaaaatttg |
1531117 |
T |
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| Q |
101 |
gaaatattcccctagatcaagaggttgagattctaagatg-ttagtgagaataatgatgagaaaagtgataactgtgaaaactaacaacaatctcataac |
199 |
Q |
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| T |
1531116 |
gaaatattcccctagatcaagaggtggagattctaagatgtttagtgagaataatgatgagaaaagtgataactgtgaaaactaacaacaatctcataac |
1531017 |
T |
|
| Q |
200 |
aatcagatttttctccacatagttatcagcaacaccaaa |
238 |
Q |
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| T |
1531016 |
aatcagatttttctccacatagttatcagcaacaccaaa |
1530978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 1526654 - 1526587
Alignment:
| Q |
151 |
taatgatgagaaaagtgataactgtgaaaactaacaacaatctcataacaatcagatttttctccaca |
218 |
Q |
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| T |
1526654 |
taatgatgagaaaagtgataactgtgaaaactaacaacaatctcatgacaatcagatttttctccaca |
1526587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 23084370 - 23084443
Alignment:
| Q |
150 |
ataatgatgagaaaagtgataactgtgaaaactaacaacaatctcataacaatcagatttttctccacatagtt |
223 |
Q |
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| T |
23084370 |
ataatgatgagaaaagtgataactgtgaaaactaataacaatctcatgacaatgagattattctccacaaagtt |
23084443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 1529835 - 1529778
Alignment:
| Q |
134 |
taagatgttagtgagaataatgatgagaaaagtgataactgtgaaaactaacaacaat |
191 |
Q |
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||||||| |||||||||||| |||||||||||| ||||| |||||||||||||||||| |
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| T |
1529835 |
taagatggtagtgagaataacgatgagaaaagtaataacagtgaaaactaacaacaat |
1529778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 30217124 - 30217178
Alignment:
| Q |
173 |
tgtgaaaactaacaacaatctcataacaatcagatttttctccacatagttatca |
227 |
Q |
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| T |
30217124 |
tgtgaaaactaacaacaatctcataacaatgagatttttctccacaaagttatca |
30217178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 43623859 - 43623782
Alignment:
| Q |
150 |
ataatgatgagaaaagtgataactgtgaaaactaacaacaatctcataacaatcagatttttctccacatagttatca |
227 |
Q |
| |
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|||| |||||||||| ||| | ||||||||||||||||||||||||||| || ||||||||||||||| |||||||| |
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| T |
43623859 |
ataacgatgagaaaattgaaagatgtgaaaactaacaacaatctcataacgatgagatttttctccacaaagttatca |
43623782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 43995147 - 43995224
Alignment:
| Q |
150 |
ataatgatgagaaaagtgataactgtgaaaactaacaacaatctcataacaatcagatttttctccacatagttatca |
227 |
Q |
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|||| |||||||||| ||| | ||||||||||||||||||||||||||| || ||||||||||||||| |||||||| |
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| T |
43995147 |
ataacgatgagaaaattgaaagatgtgaaaactaacaacaatctcataacgatgagatttttctccacaaagttatca |
43995224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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