View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_235 (Length: 242)
Name: NF6868A_low_235
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_235 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 8366766 - 8366995
Alignment:
| Q |
1 |
cgccccgaatgtgcaaatacaatacaatacaacttttctttggaccactattctctcgcaattaaaccaagaataacaattttacattcttaattatcct |
100 |
Q |
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| T |
8366766 |
cgccccgggtgtgcaaatacaatacaatacaacttttctttggaccactattctctcgcaattaaaccaagaataacaattttacattcttaattatcct |
8366865 |
T |
|
| Q |
101 |
tcaacatatcnnnnnnnnngctctattttaattaacaaacttttcttatcttatatataac-aaaaaatgaaagtgaaattaatgttattttagttttgt |
199 |
Q |
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| T |
8366866 |
tcaaaatatc-ttttttttgctctattttaattaacaaacttttcttatcttatatataacaaaaaaatggaagtgaaattaatgttctttgagttttgt |
8366964 |
T |
|
| Q |
200 |
cattttaaaacgcgaagttcatgatgtccat |
230 |
Q |
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| T |
8366965 |
cattttaaaaggcaaagttcatcatgtccat |
8366995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 8376645 - 8376861
Alignment:
| Q |
21 |
aatacaatacaacttttctttggacc----actattctctcgcaattaaaccaagaat-aacaattttacattcttaattatccttcaacatatc--nnn |
113 |
Q |
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|||||||||||||||||| ||||||| ||| |||||||||||||||||||||| | ||||||| ||||||| ||| |||||| ||||||||| |
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| T |
8376645 |
aatacaatacaacttttccttggacccaccactcttctctcgcaattaaaccaagactaaacaattctacattcctaa-tatcctccaacatatcttttt |
8376743 |
T |
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| Q |
114 |
nnnnnngctctattttaattaacaaacttttcttatcttatatataacaaaaaatga--aagtgaaa-ttaatgttattttagttttgtcattttaaaac |
210 |
Q |
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| T |
8376744 |
ttttttgttctattttaattaacatacttttcatatcttatat-tacaaaaaaaagaagaagtgaaatttaatgtt-cttcaattttgtcattttaaaac |
8376841 |
T |
|
| Q |
211 |
gcgaagttcatgatgtccat |
230 |
Q |
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| T |
8376842 |
gcaaagttcatcatatccat |
8376861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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