View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_236 (Length: 242)
Name: NF6868A_low_236
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_236 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 42 - 229
Target Start/End: Complemental strand, 48154347 - 48154160
Alignment:
| Q |
42 |
ataaaaaccccctccaaactcttcgctacctcctaacacaacactgatcnnnnnnnnnnnnnnnnnnngctgcaaaaccgtcctcaacctcactgcttct |
141 |
Q |
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| T |
48154347 |
ataaaaaccccctccaaactcttcgctacctcctaacacaacactgatctatatatatatat------gctgcaaaaccgtcctcaacctcactgcttct |
48154254 |
T |
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| Q |
142 |
accatcatgtccaactc------accctcttcatcttctctatccatggacatagacgaatccatagaaactcgaatcaaccgcttcatatcag |
229 |
Q |
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| T |
48154253 |
accatcatgtccaactccaactcaccctcttcatcttctctatccatggacatagacgaatccacagaaactcgaatcaaccgcctcatatcag |
48154160 |
T |
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