View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_241 (Length: 241)
Name: NF6868A_low_241
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_241 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 234
Target Start/End: Original strand, 3855371 - 3855601
Alignment:
| Q |
4 |
catcaaaatggaggatgatacgcttatgttcaaaatgaaggtgggaaagaacctcaacaaagattcaaaaaaggaaaatgctatttatcacgagaattcc |
103 |
Q |
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| T |
3855371 |
catcaaaatggaggaggatacacttatgttcaaaatgaaggtgggaaagaacctcaacaaagattcaaaaaaggaaaatgctatttatcacaagaattcc |
3855470 |
T |
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| Q |
104 |
tttcacgacaacatcccgatggacgacggtaaaattttaatatctttctacatcattttatttcaaaccacccatgtattgtaattaaaggtctagatca |
203 |
Q |
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| T |
3855471 |
tttcacgacaacatcccgatggacgacggtaaaattttaatatctttctacatcattttatttcaaaccacccatgtattgtaattaaaggtctagatca |
3855570 |
T |
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| Q |
204 |
aacggttcaaaatcattcgcgatattcttgg |
234 |
Q |
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| T |
3855571 |
aacggttcaaaatcattcgcgatgttcttgg |
3855601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 76 - 231
Target Start/End: Complemental strand, 24242159 - 24242011
Alignment:
| Q |
76 |
ggaaaatgctatttatcacgagaattcctttcacgacaacatcccgatggacgacggtaaaattttaatatctttctacatcattttatttcaaaccacc |
175 |
Q |
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| T |
24242159 |
ggaaaatgctacttatcatgaaaattcttttcacgacaacatcccgatgg-------tacaattttaatatctttctacaccattttatttccaaccacc |
24242067 |
T |
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| Q |
176 |
catgtattgtaattaaaggtctagatcaaacggttcaaaatcattcgcgatattct |
231 |
Q |
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| T |
24242066 |
catgtattttaattaaaggcctagatcaaacggttcaaaatcattcgcgatgttct |
24242011 |
T |
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