View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_243 (Length: 241)
Name: NF6868A_low_243
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_243 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 34444249 - 34444044
Alignment:
| Q |
16 |
atcaatttttgaagaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccatta |
115 |
Q |
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| T |
34444249 |
atcaatttttgaagaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccatta |
34444150 |
T |
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| Q |
116 |
aatgaaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagttccaacgcgg |
215 |
Q |
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| T |
34444149 |
aatgaaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagttccaacgcgg |
34444050 |
T |
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| Q |
216 |
agataa |
221 |
Q |
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|||||| |
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| T |
34444049 |
agataa |
34444044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 34437498 - 34437297
Alignment:
| Q |
20 |
atttttgaagaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccattaaatg |
119 |
Q |
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||||||||||||||| |||||||||||||||||||||| || | |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
34437498 |
atttttgaagaagtgcttatagatttccatgaagaggatttaagaggaaaccaaattctatcataaacatcatcttgatatctaccacttccattaaatg |
34437399 |
T |
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| Q |
120 |
aaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagttccaacgcggagat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| || ||||| |
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| T |
34437398 |
aaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccaaactcagttttataaatagagttatcaattggtctaagttccaatgctgagat |
34437299 |
T |
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| Q |
220 |
aa |
221 |
Q |
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|| |
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| T |
34437298 |
aa |
34437297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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