View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_245 (Length: 239)
Name: NF6868A_low_245
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_245 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 178115 - 177888
Alignment:
| Q |
1 |
tgaaattgcttccgggtggtcatgatgacttcttcggttgcatccattttaaaacatccgaacttgtcttttgagtgctttatggcttcacgaatgttga |
100 |
Q |
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| T |
178115 |
tgaaattgcttccgggtggtcatgatgacttcttcggttgcatccattttaaaacatccgaacttgtcttttgagtgctttatggcttcacgaatgttga |
178016 |
T |
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| Q |
101 |
aagtaacctcttcattatcaactttaaccttcatgatgttatcatcgaggtcaatcatcattcgagccgtttgcatgaagttcctacctataagtagagg |
200 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||| |
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| T |
178015 |
aagtaacctcttctttatcaactttgaccttcatgatgttatcatcgaggtcaatcatcattcgggcaatttgcatgaagttcctacccataagtagagg |
177916 |
T |
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| Q |
201 |
cacatcttcatcctccttgatgtccatc |
228 |
Q |
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| T |
177915 |
cacatcttcatcctcctcgatgtccatc |
177888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 20171737 - 20171509
Alignment:
| Q |
1 |
tgaaattgcttccgggtggtcatgatgacttcttcggttgcatccattttaaaacatccgaacttgtcttttgagtgctttatggcttcacgaatgttga |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | ||| |||||||||||||| ||||||||||||||||||| |
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| T |
20171737 |
tgaaattgcttccgagtggtcatgatgacttcttcggttgcatccattttaaagcatacactcttatcttttgagtgcttaatggcttcacgaatgttga |
20171638 |
T |
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| Q |
101 |
aagtaacctcttcattatcaact-ttaaccttcatgatgttatcatcgaggtcaatcatcattcgagccgtttgcatgaagttcctacctataagtagag |
199 |
Q |
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| T |
20171637 |
aagttacctcttcattaacaactcttaactttcataatattatcatcgaggtcaatcatcatccgtgccgtttgcatgaagtatcttcccaaaagtatag |
20171538 |
T |
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| Q |
200 |
gcacatcttcatcctccttgatgtccatc |
228 |
Q |
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| T |
20171537 |
gtacatcatcatcctcctcgatatccatc |
20171509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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