View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6868A_low_250 (Length: 237)
Name: NF6868A_low_250
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_250 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 17202901 - 17202968
Alignment:
| Q |
144 |
tctaacataaaagagtgtatcatctttatatatcattatagaagtaaataaacgaaaaaacagacatga |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17202901 |
tctaacataaaa-agtgtatcatctttatatatcattatagaagtaaataaacgaacaaacagacatga |
17202968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 17202797 - 17202844
Alignment:
| Q |
36 |
tcttattttattgaaaagttaactaagtttttaattgataacttagat |
83 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
17202797 |
tcttattttattgaaaatttaactgactttttaattgataacttagat |
17202844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 35390537 - 35390490
Alignment:
| Q |
32 |
ttgttcttattttattgaaaagttaactaagtttttaattgataactta |
80 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||||||||||||||||| |
|
|
| T |
35390537 |
ttgttcttattttaatgaaac-ttaactaattttttaattgataactta |
35390490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University