View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6868A_low_251 (Length: 237)
Name: NF6868A_low_251
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_251 |
 | |
|
| [»] scaffold0284 (1 HSPs) |
| | |
|
| [»] scaffold0114 (1 HSPs) |
| | |
|
| [»] scaffold0211 (1 HSPs) |
| | |
|
| [»] scaffold0216 (1 HSPs) |
| | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold0252 (1 HSPs) |
| | |
|
| [»] scaffold0191 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0284 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: scaffold0284
Description:
Target: scaffold0284; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 2445 - 2254
Alignment:
| Q |
30 |
gagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtctcgatctgtccgtggatgcaaaagtaaatgttaagaaac |
129 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2445 |
gagacaatttaaaattttaatagattgatggactattttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaac |
2346 |
T |
|
| Q |
130 |
atataagtgagatgatcgatatacctaatacactaagattttcgatgatgatgtgctatcaattgtacgattaaccttaacataatgtgatg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
2345 |
atataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgtgatg |
2254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 26 - 233
Target Start/End: Original strand, 6553011 - 6553219
Alignment:
| Q |
26 |
atcagagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtctcgatctgtccgtggatgcaaaagtaaatgttaag |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||| |
|
|
| T |
6553011 |
atcagagacaatttaaaattttaatacattgatggactattttagcctcacatgtatccaatgtctagatctgtccctagatgcaaaagtaaatgttaag |
6553110 |
T |
|
| Q |
126 |
aaacatataagtgagatgatcgatatacctaatacactaagattttcgatgatgatgtgctatcaattgtacgattaaccttaacataatgtgatg-tcc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
6553111 |
aaacatataagtgagatgatcgatatacctaatagactaagattttggatgatggtgtgctgtcaattgtatgattaaccttaacataatgtgatgatcc |
6553210 |
T |
|
| Q |
225 |
atctcattg |
233 |
Q |
| |
|
| ||||||| |
|
|
| T |
6553211 |
aactcattg |
6553219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 26 - 233
Target Start/End: Original strand, 6552611 - 6552819
Alignment:
| Q |
26 |
atcagagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtctcgatctgtccgtggatgcaaaagtaaatgttaag |
125 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
6552611 |
atcagagacaatttaaatctttaatacattgatggactattttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaaa |
6552710 |
T |
|
| Q |
126 |
aaacatataagtgagatgatcgatatacctaatacactaagattttcgatgatgatgtgctatcaattgtacgattaaccttaacataatgtgatg-tcc |
224 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
6552711 |
aaacgtataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatgatcc |
6552810 |
T |
|
| Q |
225 |
atctcattg |
233 |
Q |
| |
|
| ||||||| |
|
|
| T |
6552811 |
aactcattg |
6552819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 26 - 233
Target Start/End: Original strand, 312785 - 313003
Alignment:
| Q |
26 |
atcagagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtc----------tcgatctgtccgtggatgcaaaagt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
312785 |
atcagagacaatttaaaattttaatacattgatggactattttagcctcacatgtatccaatgtctcgatctgtctcgatctgtctgtggatgcaaaagt |
312884 |
T |
|
| Q |
116 |
aaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttcgatgatgatgtgctatcaattgtacgattaaccttaacataat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
312885 |
aaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataat |
312984 |
T |
|
| Q |
216 |
gtgatg-tccatctcattg |
233 |
Q |
| |
|
|||||| |||| ||||||| |
|
|
| T |
312985 |
gtgatgatccaactcattg |
313003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 6561023 - 6561075
Alignment:
| Q |
103 |
tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacct |
155 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||||||||||| | |||||||| |
|
|
| T |
6561023 |
tggatacaaaagtagatgttaaacaacatataagtgagatgaccaatatacct |
6561075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 26 - 214
Target Start/End: Complemental strand, 41528622 - 41528434
Alignment:
| Q |
26 |
atcagagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtctcgatctgtccgtggatgcaaaagtaaatgttaag |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |
|
|
| T |
41528622 |
atcagagacaatttaaaattttaatacattgatgtactattttagcctcacatgtatccaatgtctagatatgtccctggatgcaaaagtaaatgttaag |
41528523 |
T |
|
| Q |
126 |
aaacatataagtgagatgatcgatatacctaatacactaagattttcgatgatgatgtgctatcaattgtacgattaaccttaacataa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
41528522 |
aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataa |
41528434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 36754649 - 36754454
Alignment:
| Q |
26 |
atcagagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtctcgatctgtccgtggatgcaaaagtaaatgttaag |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||||||||| |
|
|
| T |
36754649 |
atcagagacaatttaaaattttaatacattgatggactatcttagcctcacatgtatccaatgtctagatctatccctggatgcaaaagtaaatgttaag |
36754550 |
T |
|
| Q |
126 |
aaacatataagtgagatgatcgatatacctaatacactaagattttcgatgatgatgtgctatcaattgtacgattaaccttaacataatgtgatg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| ||| |||||||||||||||||||||||| |
|
|
| T |
36754549 |
aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatctgctgtcaatagtatgattaaccttaacataatgtgatg |
36754454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 43216975 - 43216917
Alignment:
| Q |
126 |
aaacatataagtgagatgatcgatatacctaatacactaagattttcgatgatgatgtg |
184 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| | ||||||||| | |||||||||| |
|
|
| T |
43216975 |
aaacatataagtgagatgatcaatatacataatgctttaagattttgggtgatgatgtg |
43216917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 28 - 233
Target Start/End: Original strand, 35117 - 35323
Alignment:
| Q |
28 |
cagagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtctcgatctgtccgtggatgcaaaagtaaatgttaagaa |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
35117 |
cagagacaatttaaaattttaatacattgatggactattttagcctcacatgtatccaatgtctagatttgtccctggatgcaaaagtaaatgttaagaa |
35216 |
T |
|
| Q |
128 |
acatataagtgagatgatcgatatacctaatacactaagattttcgatgatgatgtgctatcaattgtacgattaaccttaacataatgtgatg-tccat |
226 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||||||| |||||| |||| |
|
|
| T |
35217 |
acatataagttagatgatcgatatacctaatacactaagattttggatgatgttgtgctgtcaattgtatgattaaccttaacataaagtgatgatccaa |
35316 |
T |
|
| Q |
227 |
ctcattg |
233 |
Q |
| |
|
||||||| |
|
|
| T |
35317 |
ctcattg |
35323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 26 - 233
Target Start/End: Complemental strand, 45919832 - 45919624
Alignment:
| Q |
26 |
atcagagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtctcgatctgtccgtggatgcaaaagtaaatgttaag |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| |||| |||| ||||||||||||||||||||||| |
|
|
| T |
45919832 |
atcagagacaatttaaaattttaatacattggtggactattttagtctcacatgtatccaatgtctagatccgtccctggatgcaaaagtaaatgttaag |
45919733 |
T |
|
| Q |
126 |
aaacatataagtgagatgatcgatatacctaatacactaagattttcgatgatgatgtgctatcaattgtacgattaaccttaacataatgtgatg-tcc |
224 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
45919732 |
aaatatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatgatcc |
45919633 |
T |
|
| Q |
225 |
atctcattg |
233 |
Q |
| |
|
| ||||||| |
|
|
| T |
45919632 |
aactcattg |
45919624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 26 - 233
Target Start/End: Original strand, 49880253 - 49880463
Alignment:
| Q |
26 |
atcagagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtctcgatctgtccgtggatgcaaaagtaaatgttaag |
125 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||| || |||||||||||||||| |||| |||| ||||||||||||||||||||||| |
|
|
| T |
49880253 |
atcagagacaatttaaaatttaaatacattggtggactattttagtctcgcatgtatccaatgtctagatccgtccctggatgcaaaagtaaatgttaag |
49880352 |
T |
|
| Q |
126 |
aaacatataagtgagatgat--cgatatacctaatacactaagattttcgatgatgatgtgctatcaattgtacgattaaccttaacataatgtgatg-t |
222 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | ||||||||| |||||||||||||||||||||||| | |
|
|
| T |
49880353 |
aaacatataagtgagatgataaagatatacctaatacactaagattttgattgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatgat |
49880452 |
T |
|
| Q |
223 |
ccatctcattg |
233 |
Q |
| |
|
||| ||||||| |
|
|
| T |
49880453 |
ccaactcattg |
49880463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 40872618 - 40872562
Alignment:
| Q |
35 |
aatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtct |
91 |
Q |
| |
|
||||||||||||| ||||||| | ||||||||||||||| |||| |||| ||||||| |
|
|
| T |
40872618 |
aatttaaaattttgatacattaagggactattttagcctcacatatatcaaatgtct |
40872562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 9890602 - 9890556
Alignment:
| Q |
26 |
atcagagacaatttaaaattttaatacattgatggactattttagcc |
72 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
9890602 |
atcaaagacaatttaaaattttaatacattgaaagaccattttagcc |
9890556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 16853665 - 16853737
Alignment:
| Q |
112 |
aagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttcgatgatgatgtg |
184 |
Q |
| |
|
|||||||| || | ||||||||||||||||||||| |||||| |||| | |||| |||| | |||||||||| |
|
|
| T |
16853665 |
aagtaaatcttgaaaaacatataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatgtg |
16853737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 31088829 - 31088746
Alignment:
| Q |
103 |
tggatgcaaaagtaaatgttaagaaacatata--agtgagatgatcgatatacctaatacactaagattttcgatgatgatgtg |
184 |
Q |
| |
|
||||||||| |||| |||| ||||||||||| |||||||||||| ||||||||||| | ||| ||||| ||||||| |||| |
|
|
| T |
31088829 |
tggatgcaagagtaggtgttgagaaacatatataagtgagatgatcaatatacctaatgccttaatattttggatgatggtgtg |
31088746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 31967450 - 31967255
Alignment:
| Q |
26 |
atcagagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtctcgatctgtccgtggatgcaaaagtaaatgttaag |
125 |
Q |
| |
|
||||||||||| ||||| |||| ||| |||||||||||| |||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |
|
|
| T |
31967450 |
atcagagacaacttaaattttttataaattgatggactactttagcctcacatgtatccaatgtctagatttgtccctggatgcaaaagtaaatgttaag |
31967351 |
T |
|
| Q |
126 |
aaacatataagtgagatgatcgatatacctaatacactaagattttcgatgatgatgtgctatcaattgtacgattaaccttaacataatgtgatg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
31967350 |
aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgtgatg |
31967255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 23077894 - 23077824
Alignment:
| Q |
26 |
atcagagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtctcgatc |
96 |
Q |
| |
|
|||| |||||| |||||||||| ||||||||| | |||||||||||| |||||||||| |||||| |||| |
|
|
| T |
23077894 |
atcaaagacaacttaaaattttgatacattgaggaactattttagccccacatgtatccgatgtctagatc |
23077824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 36727670 - 36727631
Alignment:
| Q |
105 |
gatgcaaaagtaaatgttaagaaacatataagtgagatga |
144 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
36727670 |
gatgcaaaagtagatgttaagaaacatatatgtgagatga |
36727631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 41746408 - 41746338
Alignment:
| Q |
26 |
atcagagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtctcgatc |
96 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| | || ||||||||||| |||| |||| ||||||| |||| |
|
|
| T |
41746408 |
atcagagacaatttaaaattttgatatattaagggtctattttagccccacatatatcaaatgtctagatc |
41746338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 9470689 - 9470617
Alignment:
| Q |
29 |
agagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtctcgatctgtcc |
101 |
Q |
| |
|
||||||||||||||||||| ||| ||| | |||||||||| || ||||||||| ||||||| |||| |||| |
|
|
| T |
9470689 |
agagacaatttaaaattttgatatatttagtgactattttaaccccacatgtatcaaatgtctagatccgtcc |
9470617 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 36720129 - 36720169
Alignment:
| Q |
118 |
atgttaagaaacatataagtgagatgatcgatatacctaat |
158 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||||||||| |
|
|
| T |
36720129 |
atgttgagcaacatataagtgagatgatccatatacctaat |
36720169 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 9023442 - 9023635
Alignment:
| Q |
26 |
atcagagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtctcgatctgtccgtggatgcaaaagtaaatgttaag |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
9023442 |
atcagagacaatttaaaattttaatacattgatagactatcttagcctcacatgtatccaatgtctatatttgtccctggatgcaaaagtaaatgttaag |
9023541 |
T |
|
| Q |
126 |
aaacatataagtgagatgatcgatatacctaatacactaagattttcgatgatgatgtgctatcaattgtacgattaaccttaacataatgtga |
219 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
9023542 |
aaacatacaagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatgtga |
9023635 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 26 - 233
Target Start/End: Complemental strand, 20066 - 19858
Alignment:
| Q |
26 |
atcagagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtctcgatctgtccgtggatgcaaaagtaaatgttaag |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||| ||||| || |||||||||||||||||||| |
|
|
| T |
20066 |
atcagagacaatttaaaattttaatacattgatggactatcttaacctcacatgtatccaatgtctagatttgtccctgaatgcaaaagtaaatgttaag |
19967 |
T |
|
| Q |
126 |
aaacatataagtgagatgatcgatatacctaatacactaagattttcgatgatgatgtgctatcaattgtacgattaaccttaacataatgtgatg-tcc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||||||| ||| |
|
|
| T |
19966 |
aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgccaattgtattattaaccataacataatgtgatgatcc |
19867 |
T |
|
| Q |
225 |
atctcattg |
233 |
Q |
| |
|
| ||||||| |
|
|
| T |
19866 |
aactcattg |
19858 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 51 - 218
Target Start/End: Original strand, 50239968 - 50240138
Alignment:
| Q |
51 |
acattgatggactattttagcctgacatgtatccaatgtctcgatctgtccgtggatgcaaaagtaaatgttaa---gaaacatataagtgagatgatcg |
147 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||| ||||||||| | |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50239968 |
acattgatggactattttagcctcacatgtagccaatgtctagatctgtccctcgatgcaaaagtaaatgttaattagaaacatataagtgagatgatcg |
50240067 |
T |
|
| Q |
148 |
atatacctaatacactaagattttcgatgatgatgtgctatcaattgtacgattaaccttaacataatgtg |
218 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
50240068 |
atatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgtg |
50240138 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 7672539 - 7672614
Alignment:
| Q |
26 |
atcagagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtctcgatctgtcc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| || ||||||||| ||| ||| |||| |||| |
|
|
| T |
7672539 |
atcagagacaatttaaaattttaatacattgatgaactattttaaccatacatgtatcaaatatctagatccgtcc |
7672614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 43838655 - 43838725
Alignment:
| Q |
26 |
atcagagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtctcgatc |
96 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| | |||||||||||| ||||||||| ||||| |||||| |
|
|
| T |
43838655 |
atcagagacaatgtaaaattttgatacattgaggaactattttagccccacatgtatcaaatgtttcgatc |
43838725 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 14249290 - 14249223
Alignment:
| Q |
126 |
aaacatataagtgagatgatcgatatacctaatacactaagattttcgatgatgatgtgctatcaatt |
193 |
Q |
| |
|
||||||||||||||||||| | |||||| |||||| |||| |||| | |||||||||| |||||||| |
|
|
| T |
14249290 |
aaacatataagtgagatgaccaatatacataatactttaaggttttgggtgatgatgtggtatcaatt |
14249223 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 30006208 - 30006165
Alignment:
| Q |
26 |
atcagagacaatttaaaattttaatacattgatggactatttta |
69 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
30006208 |
atcagagataatttaaaattttaatacattgtgggactatttta |
30006165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 6525044 - 6525116
Alignment:
| Q |
26 |
atcagagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtctcgatctg |
98 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||| | ||||||||| ||||||| |||||| |
|
|
| T |
6525044 |
atcaaagacaatttaaaattttgatacattgatggactattttagtcccacatgtatcaaatgtctagatctg |
6525116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 21237363 - 21237428
Alignment:
| Q |
26 |
atcagagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtct |
91 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||| || |||||||| ||||||| |
|
|
| T |
21237363 |
atcagagacaatttaaaattttgatacattatgggactattttaaccccacatgtatgaaatgtct |
21237428 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0216 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0216
Description:
Target: scaffold0216; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 29209 - 29157
Alignment:
| Q |
103 |
tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacct |
155 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
29209 |
tggatgcaaaagtagatgttaaacaacatataagtgagatgatcaatatacct |
29157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 32751 - 32829
Alignment:
| Q |
105 |
gatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttcgatgatgatgtg |
184 |
Q |
| |
|
||||||| || | ||||||||||||||||||||||||||| ||||||||| || | ||| ||||| |||||||||||| |
|
|
| T |
32751 |
gatgcaagagcatatgttaagaaacatataagtgagatgactgatatacctgatgcgttaaaatttt-gatgatgatgtg |
32829 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 17171 - 17102
Alignment:
| Q |
26 |
atcagagacaatttaaaattttaatacattgatggactattttagcctgacatgtatccaatgtctcgatc |
96 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| ||||||||| ||| ||||||||| ||||||| |||| |
|
|
| T |
17171 |
atcaaagacaatttaaaattttgatacattgaaagactatttt-gccccacatgtatcaaatgtctagatc |
17102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 11645 - 11703
Alignment:
| Q |
126 |
aaacatataagtgagatgatcgatatacctaatacactaagattttcgatgatgatgtg |
184 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| |||| |||| | |||||||||| |
|
|
| T |
11645 |
aaacatataagtgagatgatcaatatacataatactttaaggttttgggtgatgatgtg |
11703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 2929478 - 2929532
Alignment:
| Q |
105 |
gatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaata |
159 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| ||||||||| | | |||||||||| |
|
|
| T |
2929478 |
gatgtaaaagtagatgttaagaaacatatatgtgagatgaccaagatacctaata |
2929532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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