View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_253 (Length: 237)

Name: NF6868A_low_253
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_253
NF6868A_low_253
[»] scaffold0197 (1 HSPs)
scaffold0197 (35-218)||(16533-16716)
[»] chr8 (9 HSPs)
chr8 (35-218)||(10686488-10686671)
chr8 (35-218)||(18867894-18868077)
chr8 (35-218)||(26299053-26299236)
chr8 (35-218)||(35743069-35743252)
chr8 (85-185)||(28893065-28893165)
chr8 (71-185)||(15946964-15947078)
chr8 (85-185)||(16755040-16755140)
chr8 (67-185)||(21039732-21039849)
chr8 (85-185)||(28330196-28330296)
[»] chr7 (12 HSPs)
chr7 (35-218)||(24263547-24263730)
chr7 (35-218)||(16882607-16882790)
chr7 (35-218)||(18411337-18411520)
chr7 (35-218)||(21986600-21986783)
chr7 (35-218)||(9187369-9187552)
chr7 (35-161)||(24272181-24272307)
chr7 (112-218)||(21643794-21643900)
chr7 (35-117)||(21642367-21642449)
chr7 (85-215)||(3322568-3322698)
chr7 (85-185)||(7072352-7072452)
chr7 (85-185)||(25407715-25407815)
chr7 (67-215)||(44012293-44012440)
[»] chr6 (7 HSPs)
chr6 (35-218)||(14739796-14739979)
chr6 (35-218)||(33333300-33333483)
chr6 (35-216)||(24433546-24433727)
chr6 (85-215)||(13881010-13881140)
chr6 (85-215)||(35203843-35203973)
chr6 (85-185)||(25943970-25944070)
chr6 (67-185)||(17692617-17692735)
[»] chr5 (10 HSPs)
chr5 (35-218)||(43594801-43594984)
chr5 (35-218)||(43627595-43627778)
chr5 (35-218)||(27447503-27447686)
chr5 (39-218)||(37558826-37559005)
chr5 (35-218)||(31399216-31399399)
chr5 (35-218)||(33789036-33789219)
chr5 (35-218)||(24557808-24557991)
chr5 (35-218)||(24598840-24599023)
chr5 (35-218)||(28835982-28836164)
chr5 (35-94)||(28805070-28805129)
[»] chr4 (6 HSPs)
chr4 (35-218)||(9226625-9226808)
chr4 (35-218)||(18858256-18858439)
chr4 (35-218)||(16626217-16626400)
chr4 (35-218)||(5145588-5145771)
chr4 (85-215)||(4567610-4567740)
chr4 (85-185)||(15314618-15314718)
[»] chr3 (16 HSPs)
chr3 (35-218)||(22170532-22170715)
chr3 (35-218)||(1308551-1308734)
chr3 (35-218)||(8514774-8514957)
chr3 (35-218)||(32478020-32478203)
chr3 (35-218)||(2674444-2674627)
chr3 (35-218)||(3325762-3325945)
chr3 (35-118)||(18144976-18145059)
chr3 (85-185)||(16459765-16459865)
chr3 (85-185)||(22623759-22623859)
chr3 (85-215)||(6305582-6305712)
chr3 (85-215)||(10096586-10096716)
chr3 (85-215)||(10203472-10203602)
chr3 (85-185)||(10610553-10610653)
chr3 (85-176)||(29911733-29911824)
chr3 (85-179)||(10899316-10899410)
chr3 (85-179)||(54190815-54190909)
[»] chr2 (9 HSPs)
chr2 (35-218)||(19346958-19347141)
chr2 (35-218)||(25393566-25393749)
chr2 (35-195)||(39485468-39485628)
chr2 (35-97)||(31058638-31058700)
chr2 (41-187)||(31133832-31133978)
chr2 (85-185)||(45569691-45569791)
chr2 (35-86)||(39485417-39485468)
chr2 (85-185)||(39684548-39684648)
chr2 (89-185)||(2738506-2738602)
[»] scaffold0006 (2 HSPs)
scaffold0006 (35-218)||(188-371)
scaffold0006 (37-218)||(8346-8527)
[»] chr1 (4 HSPs)
chr1 (37-218)||(41395933-41396102)
chr1 (35-126)||(19369001-19369092)
chr1 (85-185)||(2397035-2397135)
chr1 (85-215)||(9523999-9524129)
[»] scaffold0078 (1 HSPs)
scaffold0078 (50-194)||(34705-34849)
[»] scaffold0209 (1 HSPs)
scaffold0209 (85-185)||(924-1024)


Alignment Details
Target: scaffold0197 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 16716 - 16533
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16716 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 16617  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16616 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatctgccggtttcccactccatac 16533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 10686671 - 10686488
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10686671 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 10686572  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10686571 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatctgccggtttcccactccatac 10686488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 18868077 - 18867894
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18868077 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 18867978  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  18867977 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaacattcaaagaggagtaatctgccggtttcccactccatac 18867894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 26299053 - 26299236
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26299053 tcaagacttttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 26299152  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  26299153 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaagagtaatctgccggtttcccactccatac 26299236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 35743069 - 35743252
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35743069 tcaagactcttgatcttccactagattccaatttccacaacttatatcccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 35743168  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35743169 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 35743252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 28893165 - 28893065
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||| |||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||| ||| ||| ||| | || |||||||||||||| ||||    
T  28893165 ttcacaccttcaggataacccatgaaaatacacttcacagctctagcatcaagtttgtcttgcctgacatgggcaaacgctaaagctccgaaaactttca 28893066  T
Q  185 a 185  Q
    |    
T  28893065 a 28893065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 15947078 - 15946964
Alignment:
Q  71 acaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagc 170  Q
    |||||||||| || |||||||||||  |||||||||| || ||||| |||| | ||||||  ||||| ||||| || |||| | | ||| |||| |||||    
T  15947078 acaacttgtaacctttcacaccttcaagataaccaataaaaacacacttcacaactctagcatcaagtttgtcatgtttgacacgtgcaaatgctaaagc 15946979  T
Q  171 tccgaaaaccttcaa 185  Q
    ||||||||| |||||    
T  15946978 tccgaaaactttcaa 15946964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 16755040 - 16755140
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||| |||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||| ||| ||| ||| | || ||||||||||| || ||||    
T  16755040 ttcacaccttcaggataacccatgaaaatacacttcacagctctagcatcaagtttgtcttgcctgacatgggcaaacgctaaagctccgaagactttca 16755139  T
Q  185 a 185  Q
    |    
T  16755140 a 16755140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 21039849 - 21039732
Alignment:
Q  67 ttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgcca 166  Q
    |||||||  ||||| || ||||||||||| |||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||  ||| ||| ||| |||| |    
T  21039849 ttccacagtttgtaacctttcacaccttcaggataacccatgaaaatacacttcacagctctagcatcaag-ttgtcttgtctgacatgagcaaatgcta 21039751  T
Q  167 aagctccgaaaaccttcaa 185  Q
    |||||| |||||| |||||    
T  21039750 aagctctgaaaacattcaa 21039732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 28330296 - 28330196
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||  |||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||| ||| ||| ||| | || ||||||||||| || ||||    
T  28330296 ttcacacctttaggataacccatgaaaatacacttcacagctctagcatcaagtttgtcttgcctgacatgggcaaacgctaaagctccgaagactttca 28330197  T
Q  185 a 185  Q
    |    
T  28330196 a 28330196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 24263730 - 24263547
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24263730 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 24263631  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24263630 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatctgccggtttcccactccatac 24263547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 16882607 - 16882790
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16882607 tcaagactcttgatcttccactagattccaatttccacaacttgtatcccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 16882706  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16882707 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatctgccggtttcccactccatac 16882790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 18411337 - 18411520
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18411337 tcaagacttttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataacaaatgaagacacatttcaaagctctaggctc 18411436  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||| ||||||||||||||||||||    
T  18411437 aagcttgtcttgcttgatatgcgcatatgtcaaagctccaaaaaccttcaaagaagagtaatctgccggtttcccactccatac 18411520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 21986600 - 21986783
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21986600 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccagataaccaatgaagacacatttcaaagctctaggctc 21986699  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| || |||| |||||||||||||||    
T  21986700 aagcttgtcttgcttgatatgtgcatatgccaaagcttcgaaaaccttcaaagatgagtagtctgccgatttcccactccatac 21986783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 9187552 - 9187369
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    |||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9187552 tcaagacttttgatcctccactagattccaatttccacagcttgtaacccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 9187453  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |  ||||||||||||||||||||    
T  9187452 aagcttgtcttgcttgatatgcgcatatgccaaagctccaaaaaccttcaaagatgagtagtttgccggtttcccactccatac 9187369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 24272307 - 24272181
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    |||||||| || |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24272307 tcaagacttttaatcctcaactagattccaatttccacaacttgtaacccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 24272208  T
Q  135 aagcttgtcttgcttgatatgcgcata 161  Q
    || ||||||||||||||||||||||||    
T  24272207 aatcttgtcttgcttgatatgcgcata 24272181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 21643794 - 21643900
Alignment:
Q  112 acacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccac 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21643794 acacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatcagccggtttcccac 21643893  T
Q  212 tccatac 218  Q
    |||||||    
T  21643894 tccatac 21643900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 21642367 - 21642449
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacat 117  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21642367 tcaagacttttgatcctccaatagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacat 21642449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 215
Target Start/End: Original strand, 3322568 - 3322698
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||| |||||||| ||||| | ||| ||||  |||||||  ||||| ||||||||| ||||||| ||| | || ||||||||||| || ||||    
T  3322568 ttcacaccttcaggataacccatgaaaatacacttcaccgctctagcatcaagtttgtcttgcctgatatgggcaaacgctaaagctccgaagactttca 3322667  T
Q  185 aagaggagtaatccgccggtttcccactcca 215  Q
    |    ||||| || |||||| ||||||||||    
T  3322668 agttagagtagtctgccggtctcccactcca 3322698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 7072452 - 7072352
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||| |||||||| ||||| | ||| |||| | ||||||  ||||| ||||||||| ||| ||| ||| |||| ||||||||||| || ||||    
T  7072452 ttcacaccttcaggataacccatgaaaatacacttcacaactctagcatcaagtttgtcttgcctgacatgggcaaatgctaaagctccgaagactttca 7072353  T
Q  185 a 185  Q
    |    
T  7072352 a 7072352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 25407815 - 25407715
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||| |||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||  ||| ||| ||| | || |||||||||||||| ||||    
T  25407815 ttcacaccttcaggataacccatgaaaatacacttcacagctctagcatcaagtttgtcttgtctgacatgagcaaacgctaaagctccgaaaactttca 25407716  T
Q  185 a 185  Q
    |    
T  25407715 a 25407715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 215
Target Start/End: Original strand, 44012293 - 44012440
Alignment:
Q  67 ttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgcca 166  Q
    |||||||  ||||| || ||||||||||| |||||||| ||||| | ||| |||| | ||||||  ||||| ||||| ||  ||| ||| ||| |||| |    
T  44012293 ttccacagtttgtaacctttcacaccttcaggataacccatgaaaatacacttcacaactctagcatcaagtttgtcctgtctgacatgagcaaatgcta 44012392  T
Q  167 aagctccgaaaaccttcaaagaggagtaatccgccggtttcccactcca 215  Q
    ||||||| ||||| ||||||   ||||| || |||||| ||||||||||    
T  44012393 aagctcc-aaaactttcaaattagagtagtctgccggtctcccactcca 44012440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 14739979 - 14739796
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14739979 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 14739880  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14739879 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatctgccggtttcccactccatac 14739796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 33333483 - 33333300
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33333483 tcaagactcttgatcttccactagattccaatttccacaacttgtatcccttcacaccttcctgataaccaatgaagacacatttcaaagctctaggctc 33333384  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33333383 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 33333300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 35 - 216
Target Start/End: Complemental strand, 24433727 - 24433546
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    |||||||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24433727 tcaagacttttgatcctccactagattcaaatttacacaacttgtaacccttcacaccttccagataaccaatgaagacacatttcaaagctctaggctc 24433628  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccat 216  Q
    |||||||| ||| |||||||||||||||| |||| ||||||||||||||||||| ||||||   || |||||||| ||||||    
T  24433627 aagcttgtattgattgatatgcgcatatgtcaaaactccgaaaaccttcaaagatgagtaaattgctggtttcccgctccat 24433546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 215
Target Start/End: Complemental strand, 13881140 - 13881010
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||| |||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||| ||| ||| ||| | || ||||||||||| || ||||    
T  13881140 ttcacaccttcaggataacccatgaaaatacacttcacagctctagcatcaagtttgtcttgcctgacatgggcaaacgctaaagctccgaagactttca 13881041  T
Q  185 aagaggagtaatccgccggtttcccactcca 215  Q
    |    ||||| || |||||| ||||||||||    
T  13881040 agttagagtagtctgccggtgtcccactcca 13881010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 215
Target Start/End: Original strand, 35203843 - 35203973
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||| |||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||| ||| ||| ||| | || ||||||||||| || ||||    
T  35203843 ttcacaccttcaggataacccatgaaaatacacttcacagctctagcatcaagtttgtcttgcctgacatgggcaaacgctaaagctccgaagactttca 35203942  T
Q  185 aagaggagtaatccgccggtttcccactcca 215  Q
    |    ||||| || |||||| ||||||||||    
T  35203943 agttagagtagtctgccggtctcccactcca 35203973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 25944070 - 25943970
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||| |||||||| ||||| | |||||||| ||||||||  ||||| |||||| |  | | ||| ||| |||| |||||||||||||| ||||    
T  25944070 ttcacaccttcaggataacccatgaaaatacatttcacagctctagcatcaagtttgtctagtctcacatgagcaaatgctaaagctccgaaaactttca 25943971  T
Q  185 a 185  Q
    |    
T  25943970 a 25943970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 17692617 - 17692735
Alignment:
Q  67 ttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgcca 166  Q
    ||||||||| |||| || ||||||||||| |||||||| ||||| | ||| |||| |||||||   ||||| ||||||||  ||| ||| ||| | || |    
T  17692617 ttccacaacctgtaacctttcacaccttcaggataacccatgaaaatacacttcacagctctaacatcaagtttgtcttgtctgacatgagcaaacgcta 17692716  T
Q  167 aagctccgaaaaccttcaa 185  Q
    |||| |||||||| |||||    
T  17692717 aagccccgaaaactttcaa 17692735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 43594801 - 43594984
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43594801 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 43594900  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43594901 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatctgccggtttcccactccatac 43594984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 43627595 - 43627778
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43627595 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 43627694  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43627695 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatctgccggtttcccactccatac 43627778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 27447503 - 27447686
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27447503 tcaaggctcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 27447602  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27447603 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatctgccggtttcccactccatac 27447686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 39 - 218
Target Start/End: Complemental strand, 37559005 - 37558826
Alignment:
Q  39 gactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagc 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37559005 gactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagc 37558906  T
Q  139 ttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37558905 ttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccaccggtttcccactccatac 37558826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 31399399 - 31399216
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31399399 tcaagactcttgatcttccactagattccaatttccacaacttgtatcccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 31399300  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31399299 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaattcgccggtttcccactccatac 31399216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 33789036 - 33789219
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33789036 tcaagactcttgatcttccactagattccaatttccacaacttatatcccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 33789135  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33789136 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccaccggtttcccactccatac 33789219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 24557991 - 24557808
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24557991 tcaagacttttgatcctccactagattccaatttccacaacttgtaacccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 24557892  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||    
T  24557891 aagcttgtcttgcttgatatgcgcatatgccaaagctccaaaaaccttcaatgatgagtaatctgccggtttcccactccatac 24557808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 24599023 - 24598840
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24599023 tcaagacttttgatcctccactagattccaatttccacaacttgtaacccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 24598924  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||    
T  24598923 aagcttgtcttgcttgatatgcgcatatgccaaagctccaaaaaccttcaatgatgagtaatctgccggtttcccactccatac 24598840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 28835982 - 28836164
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28835982 tcaagacttttgatcctccactagattccaatttccacaacttgtaacccttctcaccttccggataaccaatgaagacacatttcaaagctctaggctc 28836081  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    |||||||||||||||||||| |||||||| |||||||||||||||| ||||||| ||||||||  |||||||||||||||||||    
T  28836082 aagcttgtcttgcttgatatacgcatatg-caaagctccgaaaaccatcaaagatgagtaatctaccggtttcccactccatac 28836164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 28805129 - 28805070
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacacctt 94  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28805129 tcaagactcttgatcctccactagatttcaatttccacaacttgtaccccttcacacctt 28805070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 9226808 - 9226625
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9226808 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 9226709  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9226708 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatctgccggtttcccactccatac 9226625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 18858256 - 18858439
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18858256 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 18858355  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18858356 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatctgccggtttcccactccatac 18858439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 16626400 - 16626217
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  16626400 tcaagacttttgatcctccactagattccaatttccacaactcgtaacccttcagaccttccggataaccaatgaagatacatttcaaagctctaggctc 16626301  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||||||    
T  16626300 aagcttgtcttgcttgatatgcgcatatgtcaaagctcagaaaaccttcaaagaagagtaatctgccggtttcccactccatac 16626217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 5145588 - 5145771
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| |||||||||||||||||||||| |||    
T  5145588 tcaagacttttgatcctccactagattccaatttccacaacttgtaacccttcacaccttctggataacgaataaagacacatttcaaagctctagtctc 5145687  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| |||||||    
T  5145688 aagcttgtctttcttgatatgcgcatatgccaaagctccgaaaaccttcaaagatgagtagtctgccggtttcccattccatac 5145771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 215
Target Start/End: Complemental strand, 4567740 - 4567610
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||| |||||||| ||||| | ||| |||| | ||||||  ||||| ||||| ||  ||| ||| ||| |||| |||||||||||||| ||||    
T  4567740 ttcacaccttcaggataacccatgaaaatacacttcacaactctagcatcaagtttgtcctgtctgacatgagcaaatgctaaagctccgaaaactttca 4567641  T
Q  185 aagaggagtaatccgccggtttcccactcca 215  Q
    ||   ||||| || |||| | ||||||||||    
T  4567640 aattagagtagtctgccgatctcccactcca 4567610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 15314718 - 15314618
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||| |||||||  ||||| | ||| |||| ||||||||  ||||| ||||||||| ||| ||| | | | || |||||||||||||| ||||    
T  15314718 ttcacaccttcaggataactcatgaaaatacacttcacagctctagcatcaagtttgtcttgcctgacatgagaaaacgctaaagctccgaaaactttca 15314619  T
Q  185 a 185  Q
    |    
T  15314618 a 15314618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 22170715 - 22170532
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22170715 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 22170616  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22170615 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatctgccggtttcccactccatac 22170532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 1308551 - 1308734
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1308551 tcaagacttttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 1308650  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  1308651 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaagagtaatctgccggtttcccactccatac 1308734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 8514774 - 8514957
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8514774 tcaagactcttgatcttccactagattccaatttccacaacttgtatcccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 8514873  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8514874 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatctgccggtttcccactccatac 8514957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 32478020 - 32478203
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32478020 tcaagactcttgatcttccactagattccaatttccacaacttgtatcccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 32478119  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32478120 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatctgccggtttcccactccatac 32478203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 2674627 - 2674444
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||| ||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2674627 tcaagactcttgatcttccactagattccaatttccacaactcttatcccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 2674528  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2674527 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 2674444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 3325945 - 3325762
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3325945 tcaagacttttgatcctccactagattccaattttcacaacttgtaacccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 3325846  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |  ||||||||||||||||    
T  3325845 aagcatgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagatgagtaatcttctagtttcccactccatac 3325762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 18144976 - 18145059
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatt 118  Q
    |||||||  |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18144976 tcaagacatttgatcctccaccagattccaatttccacaacttgtaacccttcacaccttccggataaccaatgaagacacatt 18145059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 16459865 - 16459765
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    |||||||||||  ||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||| ||| ||||||| | || |||||||||||||| ||||    
T  16459865 ttcacaccttcaagataacccatgaaaatacacttcacagctctagcatcaagtttgtcttgcatgacatgcgcaaacgctaaagctccgaaaactttca 16459766  T
Q  185 a 185  Q
    |    
T  16459765 a 16459765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 22623759 - 22623859
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||| |||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||| ||| ||| ||| | || |||||||||||||| ||||    
T  22623759 ttcacaccttcaggataacccatgaaaatacacttcatagctctagcatcaagtttgtcttgcctgacatgagcaaacgctaaagctccgaaaactttca 22623858  T
Q  185 a 185  Q
    |    
T  22623859 a 22623859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 215
Target Start/End: Complemental strand, 6305712 - 6305582
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||| |||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||| ||| ||| ||| | || ||||||||||| || ||||    
T  6305712 ttcacaccttcaggataacccatgaaaatacacttcacagctctagcatcaagtttgtcttgcctgacatgggcaaacgctaaagctccgaagactttca 6305613  T
Q  185 aagaggagtaatccgccggtttcccactcca 215  Q
    |    ||||| || |||||| ||||||||||    
T  6305612 agttagagtagtctgccggtctcccactcca 6305582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 215
Target Start/End: Original strand, 10096586 - 10096716
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||| |||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||| ||| ||| ||| | || ||||||||||| || ||||    
T  10096586 ttcacaccttcaggataacccatgaaaatacacttcacagctctagcatcaagtttgtcttgcctgacatgggcaaacgctaaagctccgaagactttca 10096685  T
Q  185 aagaggagtaatccgccggtttcccactcca 215  Q
    |    ||||| || |||||| ||||||||||    
T  10096686 agttagagtagtctgccggtgtcccactcca 10096716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 215
Target Start/End: Original strand, 10203472 - 10203602
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||| |||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||| ||| ||| ||| | || ||||||||||| || ||||    
T  10203472 ttcacaccttcaggataacccatgaaaatacacttcacagctctagcatcaagtttgtcttgcctgacatgggcaaacgctaaagctccgaagactttca 10203571  T
Q  185 aagaggagtaatccgccggtttcccactcca 215  Q
    |    ||||| || |||||| ||||||||||    
T  10203572 agttagagtagtctgccggtctcccactcca 10203602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 10610553 - 10610653
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||| |||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||  ||| ||| ||| | || |||||||||||||| ||||    
T  10610553 ttcacaccttcaggataacccatgaaaatacacttcacagctctagcatcaagtttgtcttgtctgacatgagcaaacgctaaagctccgaaaactttca 10610652  T
Q  185 a 185  Q
    |    
T  10610653 a 10610653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 29911733 - 29911824
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaa 176  Q
    ||||||||||| |||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||| ||| ||| ||| | || |||||||||||    
T  29911733 ttcacaccttcaggataacccatgaaaatacacttcacagctctagcatcaagtttgtcttgcctgacatgagcaaacgctaaagctccgaa 29911824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 10899410 - 10899316
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaac 179  Q
    ||||||||||| |||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||  ||| ||| ||| |||| ||||||| ||||||    
T  10899410 ttcacaccttcaggataacccatgaaaatacacttcacagctctagcatcaagtttgtcttgtctgacatgagcaaatgctaaagctctgaaaac 10899316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 54190909 - 54190815
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaac 179  Q
    ||||||||||| |||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||  ||| ||| ||| | || ||||||||||||||    
T  54190909 ttcacaccttcaggataacccatgaaaatacacttcacagctctagcatcaagtttgtcttgtctgacatgagcaaacgctaaagctccgaaaac 54190815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 19346958 - 19347141
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||| |||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19346958 tcaagactcttgatcttccactagattccaattttcacaacttatatcccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 19347057  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19347058 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 19347141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 25393566 - 25393749
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25393566 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 25393665  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||    
T  25393666 aagcttgtcttgcttgatatgtgcatatgccaaagctccgtaaaccttcaaagatgagtaatctgccggtttcccactccatac 25393749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 35 - 195
Target Start/End: Complemental strand, 39485628 - 39485468
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39485628 tcaagacttttgatcctccactagattccaatttccacaacttgtaacccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 39485529  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaa 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39485528 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagatgagtaa 39485468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 31058638 - 31058700
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccg 97  Q
    |||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31058638 tcaagacttttgaccctccactagattccaatttccacaacttgtaacccttcacaccttccg 31058700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 187
Target Start/End: Complemental strand, 31133978 - 31133832
Alignment:
Q  41 ctcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagctt 140  Q
    ||||||||||||   ||||||||||||||||||||||||| |  | |||||  || |||||||||||||||| |||||||| | ||| ||  ||||||||    
T  31133978 ctcttgatcctcatatagattccaatttccacaacttgtaactgtgcacacgctctggataaccaatgaagaaacatttcacaactccagcatcaagctt 31133879  T
Q  141 gtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaag 187  Q
    ||||| ||||||||||  ||| || |||||  |||||| ||||||||    
T  31133878 gtcttacttgatatgcagatacgctaaagcctcgaaaatcttcaaag 31133832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 45569791 - 45569691
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||| |||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||| ||||||| ||| | || ||||||||||| || ||||    
T  45569791 ttcacaccttcaggataacccatgaaaatacacttcacagctctagcatcaagtttgtcttgcctgatatgggcaaacgctaaagctccgaagactttca 45569692  T
Q  185 a 185  Q
    |    
T  45569691 a 45569691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 39485417 - 39485468
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtacccctt 86  Q
    |||||| | |||||||| |||||||||||||||||||||||||||| |||||    
T  39485417 tcaagatttttgatccttcactagattccaatttccacaacttgtaaccctt 39485468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 39684648 - 39684548
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||| |||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||| ||| ||| ||| | || ||||||||||| || ||||    
T  39684648 ttcacaccttcaggataacccatgaaaatacacttcacagctctagcatcaagtttgtcttgcctgacatgggcaaacgctaaagctccgaagactttca 39684549  T
Q  185 a 185  Q
    |    
T  39684548 a 39684548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 2738602 - 2738506
Alignment:
Q  89 caccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaa 185  Q
    ||||||| |||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||| ||| ||| ||| | || ||||||||||| || |||||    
T  2738602 caccttcaggataacccatgaaaatacacttcacagctctagcatcaagtttgtcttgcctgacatgggcaaacgctaaagctccgaagactttcaa 2738506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 188 - 371
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 134  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  188 tcaagacttttgatcctccactagattccaatttccacaacttgtaacccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctc 287  T
Q  135 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||    
T  288 aagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagatgagtaatctgccgctttcccactccatac 371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 37 - 218
Target Start/End: Original strand, 8346 - 8527
Alignment:
Q  37 aagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaa 136  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8346 aagacttttgatcctccactagattccaatttccacaacttgtaacccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaa 8445  T
Q  137 gcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||    
T  8446 gcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagatgagtaatctgccgctttcccactccatac 8527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 37 - 218
Target Start/End: Original strand, 41395933 - 41396102
Alignment:
Q  37 aagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaa 136  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |             |    
T  41395933 aagactcttgatcctcaactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcca------------ca 41396020  T
Q  137 gcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatccgccggtttcccactccatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  41396021 gcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttcaaagaggagtaatctgcgggtttcccactccatac 41396102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 19369092 - 19369001
Alignment:
Q  35 tcaagactcttgatcctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagct 126  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19369092 tcaagacttttgatcctccactagattctaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagct 19369001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 2397035 - 2397135
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||| ||| |||||||| ||||| | ||| |||| ||||||||  ||||| ||||| ||||||| ||| ||| |||| |||||||||||||| ||||    
T  2397035 ttcacactttcaggataacccatgaaaatacacttcacagctctagcatcaagtttgtcctgcttgacatgagcaaatgctaaagctccgaaaactttca 2397134  T
Q  185 a 185  Q
    |    
T  2397135 a 2397135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 215
Target Start/End: Complemental strand, 9524129 - 9523999
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||| |||||||| ||||| | ||| |||| ||||||||  ||||| ||||||||| ||| ||| ||| | || ||||||||||| || ||||    
T  9524129 ttcacaccttcaggataacccatgaaaatacacttcacagctctagcatcaagtttgtcttgcctgacatgggcaaacgctaaagctccgaagactttca 9524030  T
Q  185 aagaggagtaatccgccggtttcccactcca 215  Q
    |    ||||| || |||||| ||||||||||    
T  9524029 agttagagtagtctgccggtctcccactcca 9523999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 34705 - 34849
Alignment:
Q  50 ctccactagattccaatttccacaacttgtaccccttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgctt 149  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||    
T  34705 ctccaccagattccaatttccacaacttgtaacccttcacaccttccggataaccaatgaagacacatttcacagctctagccttaagcttgtcttgctt 34804  T
Q  150 gatatgcgcatatgccaaagctccgaaaaccttcaaagaggagta 194  Q
    ||||||||||||||||||| ||  || |||||||| ||| |||||    
T  34805 gatatgcgcatatgccaaatcttagagaaccttcatagatgagta 34849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 924 - 1024
Alignment:
Q  85 ttcacaccttccggataaccaatgaagacacatttcaaagctctaggctcaagcttgtcttgcttgatatgcgcatatgccaaagctccgaaaaccttca 184  Q
    ||||||||||| |||||||| ||||| | |||||| | ||||||||  ||||| ||||||||| | | ||| ||| | || |||||||||||||| ||||    
T  924 ttcacaccttcaggataacccatgaaaatacattttacagctctagcatcaagtttgtcttgcctaacatgggcaaacgctaaagctccgaaaactttca 1023  T
Q  185 a 185  Q
    |    
T  1024 a 1024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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