View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_256 (Length: 235)

Name: NF6868A_low_256
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_256
NF6868A_low_256
[»] chr1 (1 HSPs)
chr1 (43-207)||(47288854-47289018)
[»] chr4 (2 HSPs)
chr4 (83-207)||(15664320-15664444)
chr4 (84-181)||(30785512-30785609)
[»] chr3 (1 HSPs)
chr3 (160-210)||(43487262-43487312)
[»] scaffold0179 (1 HSPs)
scaffold0179 (22-75)||(33065-33118)
[»] chr7 (1 HSPs)
chr7 (118-182)||(42675323-42675387)
[»] chr8 (2 HSPs)
chr8 (107-182)||(2543098-2543172)
chr8 (107-209)||(2533533-2533634)
[»] chr5 (1 HSPs)
chr5 (140-210)||(33318283-33318353)


Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 43 - 207
Target Start/End: Complemental strand, 47289018 - 47288854
Alignment:
Q  43 gtgtgtatggtttaaaaggggtgtctacctaaaattatccttgtttatgggatcaaaattttcgaaataagacataatacatctatcaaacaaattaata 142  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  47289018 gtgtgtatggttcaaaaagggtgtctacctaaaattatccttgtttatgggatcaaaattttcgaaataaggtataatacatctatcaaacaaattaata 47288919  T
Q  143 tcttttgactttctcacttctactaatttttgacaaataataacatttgtggtagctaaatatat 207  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  47288918 tcttttgactttctcacttctactaatttttgacaaataagcacatttgtggtagctaaatatat 47288854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 15664320 - 15664444
Alignment:
Q  83 ttgtttatgggatcaaaattttcgaaataagacataatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataa 182  Q
    |||||||||||||||||| |||  ||||||||||||| ||||||||||||||| | |||||||||||| ||||  | ||||||||  |||||||||||||    
T  15664320 ttgtttatgggatcaaaagttttaaaataagacataaaacatctatcaaacaagtaaatatcttttgattttcctatttctactagcttttgacaaataa 15664419  T
Q  183 taacatttgtggtagctaaatatat 207  Q
       |||||| |||||||||||||||    
T  15664420 actcatttgcggtagctaaatatat 15664444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 30785512 - 30785609
Alignment:
Q  84 tgtttatgggatcaaaattttcgaaataagacataatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaata 181  Q
    |||||| | |||||||| | || |||||| ||  |||| |||||| |||||| | ||||| ||||| |||||  | ||||||||||||||||||||||    
T  30785512 tgtttaagagatcaaaagtgtcaaaataatacggaatatatctattaaacaagtgaatatattttggctttcctatttctactaatttttgacaaata 30785609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 43487262 - 43487312
Alignment:
Q  160 ttctactaatttttgacaaataataacatttgtggtagctaaatatatatt 210  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||||||||    
T  43487262 ttctactaattttcgacaaataatctcatttgtggtagctaaatatatatt 43487312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 33118 - 33065
Alignment:
Q  22 gccacatgggatgtgtgtagagtgtgtatggtttaaaaggggtgtctacctaaa 75  Q
    |||||||||||||||||||  |||||||||||| ||||||| ||||||| ||||    
T  33118 gccacatgggatgtgtgtatggtgtgtatggttcaaaagggatgtctacgtaaa 33065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 42675323 - 42675387
Alignment:
Q  118 aatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataa 182  Q
    ||||| |||||||||||| |  ||||||||||||||| | | |||||||| ||||||||||||||    
T  42675323 aatacttctatcaaacaagtagatatcttttgactttttaatttctactagtttttgacaaataa 42675387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 2543098 - 2543172
Alignment:
Q  107 aaataagacataatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataa 182  Q
    |||||||||| |||||||||||||||||| |  || |||||||||||||| | || ||||| ||||||| ||||||    
T  2543098 aaataagacaaaatacatctatcaaacaagtagatgtcttttgactttctta-ttttactagtttttgataaataa 2543172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 209
Target Start/End: Original strand, 2533533 - 2533634
Alignment:
Q  107 aaataagacataatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataataacatttgtggtagctaaatata 206  Q
    |||||| ||| |||||||||||||||||| |  || ||||| |||||||| | || ||||| ||||||| ||||||   ||||||||||| ||| |||||    
T  2533533 aaataaaacaaaatacatctatcaaacaagtagatgtcttt-gactttcttatttttactagtttttgataaataaattcatttgtggtaactatatata 2533631  T
Q  207 tat 209  Q
    |||    
T  2533632 tat 2533634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 33318283 - 33318353
Alignment:
Q  140 atatcttttgactttctcacttctactaatttttgacaaataataacatttgtggtagctaaatatatatt 210  Q
    |||| |||||||||||| | ||| |||| ||||||||||||||   ||||| ||||||| |||||||||||    
T  33318283 atattttttgactttcttatttcaactagtttttgacaaataaattcatttatggtagcaaaatatatatt 33318353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University