View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_259 (Length: 234)
Name: NF6868A_low_259
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_259 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 149698 - 149897
Alignment:
| Q |
16 |
catcatcatcacaacaaattgttgtaagtggaagtggaacaaacccttttatttcaactccattatatgtttcaagtggtggtgcaagttcttcaccttt |
115 |
Q |
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| T |
149698 |
catcatcatcacaacaaattgttgtaagtggaagtggaacaaacccttttatttcaactccattatatgtttcaagtggtggtgcaagttcttcaccttt |
149797 |
T |
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| Q |
116 |
tgaaacccaatttgaaacatccttaaccacaaaaagaccaagatatagtggacaatggaagcttctaccttcaccaacacaacaacaaaaacaacctcaa |
215 |
Q |
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| T |
149798 |
tgaaacccaatttgaaacatccttaaccacaaaaagaccaagatatagtggacaatggaagcttctaccttcaccaacacaacaacaaaaacaacctcaa |
149897 |
T |
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