View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_26 (Length: 429)
Name: NF6868A_low_26
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_26 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 12 - 429
Target Start/End: Complemental strand, 14321448 - 14321032
Alignment:
| Q |
12 |
atggacatcatgtgtcgcccttctaccgggggtaaaagcatcggctacttcccaaccttcttcggttgtcctcttagatgtagtcgacttaaaggtttgt |
111 |
Q |
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| T |
14321448 |
atggacattgtgtgtcgcctttctaccggtggtacaagcatcggctacttcccaaccttcttcggttgtcctcttagatgtcgtcgacttaaaggtttgt |
14321349 |
T |
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| Q |
112 |
caagggtcgtgatgcggtgttgtatctagtttatggatggttggcggcaatttgttttaagatctaccgcctccgtgcttgtgggttggtgttttttata |
211 |
Q |
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| T |
14321348 |
caagggtcgcgatgcggtgttgtatctagtttctggatggttggtgacaatttgttttaagatctaccacctccgtgccggtgggttggtgtttttgata |
14321249 |
T |
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| Q |
212 |
ttagtcgcggttgtttcaggtgccaccggcggactgtgatgagcatcgtctttcagttgtttgccctcttaatatatgtatctcatgattgattctgact |
311 |
Q |
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| T |
14321248 |
ttcgtcgcggttgtttaaggtgccaccggcggactatgatgagcatcgtctttcaattgtttgcccccttaatatatgtatctcatgatcgattttgact |
14321149 |
T |
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| Q |
312 |
aatatgatatctcgttgttctctatgtttggcttggattgtggagttcgaaagagctgtttagcttgctgacatttgttccagggagttgatggtatgtg |
411 |
Q |
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| T |
14321148 |
aatatgatatctcgtcgttctctatgtttggcttggattgtgg-gttagaaagagccgtttagcttgttgacatttgttccagggagttgatggtatgtg |
14321050 |
T |
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| Q |
412 |
gctccgcttccgtgttga |
429 |
Q |
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| T |
14321049 |
ggtccgcttccgtgttga |
14321032 |
T |
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Back To:
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 184
Target Start/End: Original strand, 41907708 - 41907831
Alignment:
| Q |
61 |
tcccaaccttcttcggttgtcctcttagatgtagtcgacttaaaggtttgtcaagggtcgtgatgcggtgttgtatctagtttatggatggttggcggca |
160 |
Q |
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||||||| |||| ||||||||||||| |||| || |||| |||||||| ||||||| ||||| ||||||||||| ||||| | |||||||| ||| |
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| T |
41907708 |
tcccaacattctccggttgtcctcttcgatgccgttgactgaaaggttttccaagggttgtgatatggtgttgtatccagtttctagatggttgctggcg |
41907807 |
T |
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| Q |
161 |
atttgttttaagatctaccgcctc |
184 |
Q |
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| T |
41907808 |
atctgttttcagatttaccgcctc |
41907831 |
T |
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