View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_262 (Length: 233)
Name: NF6868A_low_262
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_262 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 208
Target Start/End: Complemental strand, 26325034 - 26324833
Alignment:
| Q |
7 |
aatgagatggacatcattatatatatgtcaaagaggtgcaattgacggttaattaccgttggaaaattgcatgaagtcgtttcagtttgtttattttgaa |
106 |
Q |
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| T |
26325034 |
aatgagatggaaattattatatatatgtcaaagaggtgcaattgacggttaattaccgttggaaaattgcatgaagtcgtttcagtttgtttattttgaa |
26324935 |
T |
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| Q |
107 |
acgtggttattttttatttgggatttgcaaataaaaccaagaaacacgacttttcaaatttattatcagttgattaccgttagatactattgtggtcata |
206 |
Q |
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| T |
26324934 |
acgtggttattttttatttgggatttgcaaataaaaccaagaaacacgacttttcaaatttattatcagttgattaccgttagatactattgtggtcata |
26324835 |
T |
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| Q |
207 |
tt |
208 |
Q |
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| T |
26324834 |
tt |
26324833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 48320850 - 48320906
Alignment:
| Q |
36 |
aaagaggtgcaattgacggttaattaccgttggaaaattgcatgaagtcgtttcagtt |
93 |
Q |
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| T |
48320850 |
aaagaggtgcaattggcggttaattaccgtttgaaaa-tgcatgaagtcgtttcagtt |
48320906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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