View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6868A_low_265 (Length: 232)
Name: NF6868A_low_265
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_265 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 42030550 - 42030752
Alignment:
| Q |
17 |
catcaatagttaacttaaactaataaactataatacaaaagaaactgatatagcaatgtgttgacatcaatagttaaactctattctcattaataaaaac |
116 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42030550 |
catcaatagttaactgaaactaataaattataatacaaaagaaactgatatagcaatgtgttggcatcaatagttaaactctattctcattaataaaaac |
42030649 |
T |
|
| Q |
117 |
tacgggcataagctatgccaaattacatgcatcatttcgatagctaatgtaacatacatcatcaatacaaacaataggtgccgcatatagacagaacacc |
216 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42030650 |
tacgggcataaggtatgccaaattacatgcatcatttcgatagctaatgtaacatacatcatcaatacaaacaataggtgccgcatatagacggaacacc |
42030749 |
T |
|
| Q |
217 |
aaa |
219 |
Q |
| |
|
||| |
|
|
| T |
42030750 |
aaa |
42030752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 5996479 - 5996675
Alignment:
| Q |
23 |
tagttaacttaaactaataaactataatacaaaagaaactgatatagcaatgtgttgacatcaatagttaaactctattctcattaataaaaactacggg |
122 |
Q |
| |
|
||||||||| ||||||||||| |||||| | |||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
5996479 |
tagttaactgaaactaataaatgataatatagaagaaattgatataggaatgtgttgacatcaatagttaaactctattcttattaataaaaactacgcg |
5996578 |
T |
|
| Q |
123 |
cataagctatgccaaattacatgcatcatttcgatagctaatgtaacatacatcatcaatacaaacaataggtgccgcatatagacagaacaccaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
5996579 |
cataagctatgccaaattacatgcatcatttcgatagctaatataacatacatcatcaatacaaacaataggtgcctcatatagacggaacaccaaa |
5996675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 45 - 216
Target Start/End: Complemental strand, 16102414 - 16102243
Alignment:
| Q |
45 |
tataatacaaaagaaactgatatagcaatgtgttgacatcaatagttaaactctattctcattaataaaaactacgggcataagctatgccaaattacat |
144 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| || ||||||||||||| || |||| | ||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
16102414 |
tataatacagaagaaactgatataacaatgtgctgccatcaatagttaa-ctttatttttattaataaaaattacaggcataagctatgccaaattacat |
16102316 |
T |
|
| Q |
145 |
gcatcatttcgatagctaatgtaacatacatcatcaatacaaa-caataggtgccgcatatagacagaacacc |
216 |
Q |
| |
|
|||||||||| ||||||||| || |||||||||||||||||| || ||||||||||||| ||| ||||||| |
|
|
| T |
16102315 |
gcatcatttcaatagctaatatagaatacatcatcaatacaaataaacaggtgccgcatatcgacggaacacc |
16102243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 45 - 216
Target Start/End: Original strand, 12210177 - 12210348
Alignment:
| Q |
45 |
tataatacaaaagaaactgatatagcaatgtgttgacatcaatagttaaactctattctcattaataaaaactacgggcataagctatgccaaattacat |
144 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| || ||||||||||||| || |||| | ||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
12210177 |
tataatacagaagaaactgatataacaatgtgctgccatcaatagttaa-ctttatttttattaataaaaattacaggcataagctatgccaaattacat |
12210275 |
T |
|
| Q |
145 |
gcatcatttcgatagctaatgtaacatacatcatcaatacaaa-caataggtgccgcatatagacagaacacc |
216 |
Q |
| |
|
|||||||||| ||||||||| || |||||||||||||||||| || ||||||||||||| ||| ||||||| |
|
|
| T |
12210276 |
gcatcatttcaatagctaatatagaatacatcatcaatacaaataaacaggtgccgcatatcgacggaacacc |
12210348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 93 - 204
Target Start/End: Original strand, 17618363 - 17618475
Alignment:
| Q |
93 |
aactctattctcattaataaaaactacgggcataagctatgccaaattacatgcatcatttcgatagctaatgtaacatacatcatcaatacaaa-caat |
191 |
Q |
| |
|
||||||||| | ||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||| || |
|
|
| T |
17618363 |
aactctatttttattaataaaaattacaggcataagctatgccaaattacatgcatcatttcaatagctaatatagaatacatcatcaatacaaataaac |
17618462 |
T |
|
| Q |
192 |
aggtgccgcatat |
204 |
Q |
| |
|
||||||||||||| |
|
|
| T |
17618463 |
aggtgccgcatat |
17618475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University