View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6868A_low_269 (Length: 231)
Name: NF6868A_low_269
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_269 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 663602 - 663816
Alignment:
| Q |
17 |
gacatcaaaaactgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagcaaatcataaaccat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
663602 |
gacatcaaaaactgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagcaaatcataaaccat |
663701 |
T |
|
| Q |
117 |
aaaaactgttcgtatataaaatctttgtagcaccaacacttcttatcaaaggtgtgccaagtgtacaatgcatgtaagtatctaacaccgacacatgtaa |
216 |
Q |
| |
|
||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
663702 |
aaaaattgttcatatatataatctttgtagcaccaacacttcttatcaaaggtgtgccaagtgtacaatgcatgtaagtatctaacaccgacacatgtaa |
663801 |
T |
|
| Q |
217 |
tttcattgaaatatg |
231 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
663802 |
tttcattgaaatatg |
663816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 21 - 231
Target Start/End: Complemental strand, 908328 - 908118
Alignment:
| Q |
21 |
tcaaaaactgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagcaaatcataaaccataaaa |
120 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
908328 |
tcaaaaactgcattattatgcaaactccattcacaaattctcgctttctctggtatcaaaagaggcaaaatttcacataagtaaatcataaaccataaaa |
908229 |
T |
|
| Q |
121 |
actgttcgtatataaaatctttgtagcaccaacacttcttatcaaaggtgtgccaagtgtacaatgcatgtaagtatctaacaccgacacatgtaatttc |
220 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||| | || ||||||||| ||||||||||||| |||||| | | |
|
|
| T |
908228 |
tttgttgatatatataatctttgtagcaccaacactacttatcaaaggtgtgccaagtgtccgatacatgtaagtgtctaacaccgacaaatgtaagtac |
908129 |
T |
|
| Q |
221 |
attgaaatatg |
231 |
Q |
| |
|
||||||||||| |
|
|
| T |
908128 |
attgaaatatg |
908118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University