View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_279 (Length: 230)
Name: NF6868A_low_279
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_279 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 4 - 230
Target Start/End: Complemental strand, 5182312 - 5182086
Alignment:
| Q |
4 |
cggtgaaatatatagatgttgaagattggagtgattagccaaggtggtcaatgaaaatgatccttgcatgtaatttccaaagaaggataagtatgccagg |
103 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5182312 |
cggtgaaatatatagatgctgaagatttgagtgattagccaaagtgctcaatgaaaatgatccttgcatgtaatttccatagaaggataagtatgccagt |
5182213 |
T |
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| Q |
104 |
gatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctgaggtttgttaagttgcttaaacactcaggaa |
203 |
Q |
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|||||||||||| || |||| ||||||||||||||| ||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
5182212 |
gatgtgagattgctaatgaaagatggaaaatttccactgaacagattattactaagttcaagaactctaaggtttgttaagttgcttaaacactctggaa |
5182113 |
T |
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| Q |
204 |
gtttagcatcaaacatgttattgctga |
230 |
Q |
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|||||||| ||||||||||| ||||| |
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| T |
5182112 |
gtttagcactaaacatgttatagctga |
5182086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 5195703 - 5195480
Alignment:
| Q |
7 |
tgaaatatatagatgttgaagattggagtgattagccaaggtggtcaatgaaaatgatccttgcatgtaatttccaaagaaggataagtatgccagggat |
106 |
Q |
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| T |
5195703 |
tgaaatatatagaacctcaagattggaatgattagccaaagtgctcaatgaaaatgatccttgcatgtaatttccatagaaggataagtatgccagtgat |
5195604 |
T |
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| Q |
107 |
gtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctgaggtttgttaagttgcttaaacactcaggaagtt |
206 |
Q |
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| T |
5195603 |
gtgagattgctaatgaaagatggaaaatttccactgaacagattattactaagttcaagaactctgaggtttgttaagttgcttaaacaatctggaagtt |
5195504 |
T |
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| Q |
207 |
tagcatcaaacatgttattgctga |
230 |
Q |
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| T |
5195503 |
tagcactaaacatgtttttgctga |
5195480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 4842548 - 4842771
Alignment:
| Q |
7 |
tgaaatatatagatgttgaagattggagtgattagccaaggtggtcaatgaaaatgatccttgcatgtaatttccaaagaaggataagtatgccagggat |
106 |
Q |
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| T |
4842548 |
tgaaatatatagatgctgaagattggagtgattagccaaattgataagtgaaaatgatccttgcatgtaattttcatagagtgataagaatgtcaaggat |
4842647 |
T |
|
| Q |
107 |
gtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctgaggtttgttaagttgcttaaacactcaggaagtt |
206 |
Q |
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| T |
4842648 |
gtgagattggtagtgaaggatggaaaatttccaccgaacagattatggctaaggtcaagaattctgaggtttgttaagttacttaaacactcaggaagtt |
4842747 |
T |
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| Q |
207 |
tagcatcaaacatgttattgctga |
230 |
Q |
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|||| |||||||||| ||||||| |
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| T |
4842748 |
tagccccaaacatgtttttgctga |
4842771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 5160061 - 5159846
Alignment:
| Q |
7 |
tgaaatatatagatgttgaagattggagtgattagccaaggtggtcaatgaaaatgatccttgcatgtaatttccaaagaaggataagtatgccagggat |
106 |
Q |
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| T |
5160061 |
tgaaatatatagaacctcaagattggaatgattagccaaagtgctcaatgaaaatgatccttgcatgtaatttccatagaaggataagtatgccagtgat |
5159962 |
T |
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| Q |
107 |
gtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctgaggtttgttaagttgcttaaacactcaggaagtt |
206 |
Q |
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| T |
5159961 |
gtgagattgctaatgaaagatggaaactttccactgaacagattattactaagttcaagaactctgaggtttgttaagttgcttaaacactcaggaaatt |
5159862 |
T |
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| Q |
207 |
tagcatcaaacatgtt |
222 |
Q |
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||||| ||||||||| |
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| T |
5159861 |
tagcactaaacatgtt |
5159846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 5213869 - 5213670
Alignment:
| Q |
7 |
tgaaatatatagatgttgaagattggagtgattagccaaggtggtcaatgaaaatgatccttgcatgtaatttccaaagaaggataagtatgccagggat |
106 |
Q |
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| T |
5213869 |
tgaaatatatagatgctggagattggagtgattagccaaagtgctcaatgaaaatgatccttgcatgtaatttccaaagagggataagtatgccagtgat |
5213770 |
T |
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| Q |
107 |
gtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctgaggtttgttaagttgcttaaacactcaggaagtt |
206 |
Q |
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| T |
5213769 |
gtgagattactaatgaaggatggaaaatttccactgaacaaattatagctaagttcaagaacattcaggtttgttaagttgcttaaacactcgggaagtt |
5213670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 5172982 - 5172754
Alignment:
| Q |
2 |
ttcggtgaaatatatagatgttgaagattggagtgattagccaaggtggtcaatgaaaatgatccttgcatgtaatttccaaagaaggataagtatgcca |
101 |
Q |
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|||| |||||||| |||||| ||||||||||||||||||||||| || | | ||||||||||||||||||||||||| || ||| |||||| ||| || |
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| T |
5172982 |
ttcgatgaaatatgtagatgctgaagattggagtgattagccaaaatgataagtgaaaatgatccttgcatgtaattttcatagagtgataagaatgtca |
5172883 |
T |
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| Q |
102 |
gggatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctgaggtttgttaagttgcttaaacactcagg |
201 |
Q |
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| T |
5172882 |
aggatgtgagattactaatgaaggatggaaaatttccactgaatagattatggctaaggtcaagaattctgaggtttgttaagttacttaaacactcagg |
5172783 |
T |
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| Q |
202 |
aagtttagcatcaaacatgttattgctga |
230 |
Q |
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||||||||| |||||||||| ||||||| |
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| T |
5172782 |
aagtttagccccaaacatgtttttgctga |
5172754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 4857019 - 4857151
Alignment:
| Q |
4 |
cggtgaaatatatagatgttgaagattggagtgattagccaaggtggtcaatgaaaatgatccttgcatgtaatttccaaagaaggataagtatgccagg |
103 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||||||| || |
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| T |
4857019 |
cggtgaaatatatagatgctgaagatttgagtgattagccaaagtggtcaatgaaaatgatccttgcatgtaatttccatagatggat-agtatgcaaga |
4857117 |
T |
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| Q |
104 |
gatgtgagattggtagtgaaggatggaaaatttc |
137 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4857118 |
gatgtgagattggtagtgaaggatggaaaatttc |
4857151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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