View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_28 (Length: 424)
Name: NF6868A_low_28
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 7 - 418
Target Start/End: Original strand, 33498965 - 33499377
Alignment:
| Q |
7 |
tttggtgttagagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaa |
106 |
Q |
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| T |
33498965 |
tttggtgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaa |
33499064 |
T |
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| Q |
107 |
ccttctctcctcttgagtagtgtgagtgcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggagga |
206 |
Q |
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| T |
33499065 |
ccttctcttctcttgagtagtgtgagagcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggagga |
33499164 |
T |
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| Q |
207 |
aacttacaagcaagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaacttgtcttttcattccgtatgaattttattttcc-tcc |
305 |
Q |
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| T |
33499165 |
aacttacaagcaagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaacttgtcttttcattccgtatgaattttattttccttcc |
33499264 |
T |
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| Q |
306 |
tatcggaaacagttagaattggccatccttgatggtcctatgagacattttatggtgtttaaactagttaaattatttgctttttgtgtttgcttttcca |
405 |
Q |
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| T |
33499265 |
gatcggaaacagttagaattggccatctttgatggtcctatgagacattttatggtgtttaaactagttaaattatttgctttttgtgtttgcttttcta |
33499364 |
T |
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| Q |
406 |
atattgtaaactg |
418 |
Q |
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| T |
33499365 |
atattgtaaactg |
33499377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 33485754 - 33485867
Alignment:
| Q |
7 |
tttggtgttagagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaa |
106 |
Q |
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| T |
33485754 |
tttggtgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaa |
33485853 |
T |
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| Q |
107 |
ccttctctcctctt |
120 |
Q |
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| T |
33485854 |
ccttctctcctctt |
33485867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 117 - 271
Target Start/End: Original strand, 33486058 - 33486212
Alignment:
| Q |
117 |
tcttgagtagtgtgagtgcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggaggaaacttacaag |
216 |
Q |
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| T |
33486058 |
tcttgagtagtacgagtgtgaatagctcaattgaattgtcttaattttgcaggcaaaacaagcttcacatgacgcaaattcaatgaaggaaacatacaag |
33486157 |
T |
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| Q |
217 |
caagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaactt |
271 |
Q |
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| T |
33486158 |
catgcggctggagaaattatgatgtggatcgcttagaattttgatcataaaactt |
33486212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 404
Target Start/End: Original strand, 33486232 - 33486284
Alignment:
| Q |
353 |
ttttatggtgtttaaactagtta-aattatttgctttttgtgtttgcttttcc |
404 |
Q |
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| T |
33486232 |
ttttatggtgtttaaactagttttaattatatgctttttgtgtttgcttttcc |
33486284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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