View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_280 (Length: 230)
Name: NF6868A_low_280
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_280 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 26211650 - 26211504
Alignment:
| Q |
64 |
cacaagactgctcaatctcattggtaaccctctcttcnnnnnnncac--tctcttttaatagataacttgtatcttatatatttattatagcttttgtgt |
161 |
Q |
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| T |
26211650 |
cacaagactgctcaatctcattggtaaccctctcttctttttttcaccttctcttttaatagataacttgtatcttatatatt-attatagcttttgtgt |
26211552 |
T |
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| Q |
162 |
gtataaaacatgatcataaacctgaagattacttactattaattttga |
209 |
Q |
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| T |
26211551 |
gtataaaacatgatcataaacctgaagattacttactattaattttga |
26211504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 26238857 - 26238717
Alignment:
| Q |
64 |
cacaagactgctcaatctcattggtaaccctctcttcnnnnnnncact--ctcttttaatagataacttgtatcttatatatttattatagcttttgtgt |
161 |
Q |
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| T |
26238857 |
cacaagactgctcaatctcattggtaaccctctcttctttttttcactttctcttttaatagataacttgtat-------atttattatagcttttgtgc |
26238765 |
T |
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| Q |
162 |
gtataaaacatgatcataaacctgaagattacttactattaattttga |
209 |
Q |
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| T |
26238764 |
gtataaaacatgaacataaacctgaagattacttacaattaattttga |
26238717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 70 - 209
Target Start/End: Complemental strand, 26144564 - 26144424
Alignment:
| Q |
70 |
actgctcaatctcattggtaaccctctcttcnnnnnnn-cactctcttttaatagataacttgtatcttatatatttattatagcttttgtgtgtataaa |
168 |
Q |
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| T |
26144564 |
actgctcaatctcattggtaaccctctcttattttttcactctctcttttgatagatagcttgtatcttatatatttattatagcctttgtgcatataaa |
26144465 |
T |
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| Q |
169 |
acatgatcataaacctgaagattacttactattaattttga |
209 |
Q |
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| T |
26144464 |
acatgatcataaacttaaagattacttactattaattttga |
26144424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 66 - 202
Target Start/End: Complemental strand, 26116591 - 26116454
Alignment:
| Q |
66 |
caagactgctcaatctcattggtaaccctctcttcnnnnnnncact--ctcttttaatagataacttgtatcttatatatttattatagcttttgtgtgt |
163 |
Q |
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||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||||| |||||||||||||||||||||||||| |||||| | |
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| T |
26116591 |
caagagtgctcaatctcattggtaaccctctcttctttttt-cactttctcttttgatagatagcttgtatcttatatatttattatagcatttgtgcat |
26116493 |
T |
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| Q |
164 |
ataaaacatgatcataaacctgaagattacttactatta |
202 |
Q |
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| T |
26116492 |
ataaaacatgatcacaaacctgaagattacttactatta |
26116454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 26182968 - 26182878
Alignment:
| Q |
111 |
tctcttttaatagataacttgtatcttatatatttattatagcttttgtgtgtataaaacatgatcataaacctgaagattacttactatta |
202 |
Q |
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| T |
26182968 |
tctcttttgatagatagcttgtatcttatatatttattatagcattt-tgcatataaaacatgatcataaacctgaagattacttactatta |
26182878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 26136599 - 26136519
Alignment:
| Q |
123 |
gataacttgtatcttatatatttattatagcttttgtgtgtataaaacatgatcataaacctgaagattacttactattaat |
204 |
Q |
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| T |
26136599 |
gatagcttgtatcttgcatatttattttagcatttgtgcatataaa-catgataataaacctgatgattacttactattaat |
26136519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 100
Target Start/End: Complemental strand, 26136638 - 26136610
Alignment:
| Q |
72 |
tgctcaatctcattggtaaccctctcttc |
100 |
Q |
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| T |
26136638 |
tgctcaatctcattggtaaccctctcttc |
26136610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 18769712 - 18769763
Alignment:
| Q |
16 |
cactttcaacatctcttcaccaaattccaatctcttccctataccaaacaca |
67 |
Q |
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| T |
18769712 |
cactttcaacatctcttcaccaaattccaatcccttccctataccaaacaca |
18769763 |
T |
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