View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_286 (Length: 229)

Name: NF6868A_low_286
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_286
NF6868A_low_286
[»] chr2 (13 HSPs)
chr2 (6-227)||(41569122-41569330)
chr2 (181-227)||(670360-670406)
chr2 (181-227)||(17779519-17779565)
chr2 (185-227)||(28679453-28679495)
chr2 (181-227)||(29051543-29051589)
chr2 (181-227)||(31389684-31389730)
chr2 (181-228)||(7552693-7552740)
chr2 (184-227)||(18177077-18177120)
chr2 (181-227)||(433987-434033)
chr2 (180-227)||(2464137-2464184)
chr2 (185-228)||(6941075-6941118)
chr2 (185-228)||(29684552-29684595)
chr2 (185-229)||(42223844-42223888)
[»] chr8 (23 HSPs)
chr8 (181-227)||(13971257-13971303)
chr8 (181-227)||(1633778-1633824)
chr8 (181-227)||(32843830-32843876)
chr8 (181-227)||(36110275-36110321)
chr8 (178-227)||(1871500-1871549)
chr8 (180-227)||(7955894-7955941)
chr8 (181-227)||(16966922-16966968)
chr8 (181-227)||(34591401-34591447)
chr8 (178-227)||(7586048-7586097)
chr8 (181-222)||(30135902-30135943)
chr8 (182-227)||(37783860-37783905)
chr8 (184-228)||(29867191-29867235)
chr8 (181-228)||(33589119-33589166)
chr8 (178-228)||(7592986-7593036)
chr8 (181-227)||(11017942-11017988)
chr8 (185-227)||(18651497-18651539)
chr8 (181-227)||(32847574-32847620)
chr8 (187-228)||(11657895-11657936)
chr8 (179-219)||(6968119-6968159)
chr8 (181-228)||(7478915-7478962)
chr8 (185-227)||(35564426-35564468)
chr8 (181-210)||(9208219-9208248)
chr8 (179-207)||(5864350-5864378)
[»] chr4 (32 HSPs)
chr4 (178-227)||(14451530-14451579)
chr4 (179-227)||(53152207-53152255)
chr4 (181-228)||(37066123-37066170)
chr4 (181-227)||(5932046-5932092)
chr4 (181-227)||(9118752-9118798)
chr4 (178-228)||(17476012-17476062)
chr4 (181-227)||(41486031-41486077)
chr4 (181-227)||(47965874-47965920)
chr4 (180-227)||(30079983-30080030)
chr4 (180-227)||(33899213-33899260)
chr4 (180-227)||(50272960-50273007)
chr4 (181-227)||(12112764-12112810)
chr4 (181-227)||(23822136-23822182)
chr4 (181-227)||(51194406-51194452)
chr4 (181-227)||(54669472-54669518)
chr4 (179-228)||(21260434-21260483)
chr4 (179-227)||(51746357-51746405)
chr4 (181-228)||(2256219-2256266)
chr4 (184-227)||(25317957-25318000)
chr4 (184-227)||(26206868-26206911)
chr4 (181-228)||(42959408-42959455)
chr4 (185-227)||(624203-624245)
chr4 (185-227)||(13389342-13389384)
chr4 (185-227)||(31076190-31076232)
chr4 (184-229)||(41082452-41082497)
chr4 (180-229)||(43326230-43326279)
chr4 (181-229)||(6141666-6141714)
chr4 (181-227)||(35820308-35820354)
chr4 (185-227)||(55601600-55601642)
chr4 (181-210)||(40609769-40609798)
chr4 (184-216)||(6494535-6494567)
chr4 (179-227)||(41389759-41389807)
[»] chr3 (25 HSPs)
chr3 (175-227)||(54195477-54195529)
chr3 (176-227)||(36121958-36122009)
chr3 (181-227)||(10206861-10206907)
chr3 (181-227)||(39670985-39671031)
chr3 (181-227)||(44677372-44677418)
chr3 (179-227)||(37508384-37508432)
chr3 (181-228)||(35201428-35201475)
chr3 (178-228)||(22371327-22371377)
chr3 (178-227)||(51973253-51973302)
chr3 (179-227)||(26996452-26996500)
chr3 (181-229)||(33376000-33376048)
chr3 (184-227)||(28419105-28419148)
chr3 (184-227)||(32767813-32767856)
chr3 (185-228)||(55013138-55013181)
chr3 (181-227)||(11633750-11633796)
chr3 (181-227)||(43905110-43905156)
chr3 (181-227)||(54773641-54773687)
chr3 (180-228)||(390945-390993)
chr3 (189-228)||(30909165-30909204)
chr3 (184-227)||(46982794-46982837)
chr3 (181-227)||(21195779-21195825)
chr3 (181-227)||(29633960-29634006)
chr3 (185-227)||(30862965-30863007)
chr3 (185-227)||(49417711-49417753)
chr3 (178-227)||(54028079-54028128)
[»] chr1 (27 HSPs)
chr1 (179-227)||(20565004-20565052)
chr1 (181-227)||(26837589-26837635)
chr1 (178-227)||(3603248-3603297)
chr1 (179-227)||(26585765-26585813)
chr1 (185-228)||(36494587-36494630)
chr1 (180-227)||(51191925-51191972)
chr1 (181-227)||(7128255-7128301)
chr1 (181-227)||(9008362-9008408)
chr1 (181-227)||(21340658-21340704)
chr1 (178-227)||(37178841-37178890)
chr1 (187-227)||(756993-757033)
chr1 (184-227)||(33024462-33024505)
chr1 (184-227)||(38303579-38303622)
chr1 (181-227)||(1852839-1852885)
chr1 (181-227)||(4514342-4514388)
chr1 (181-227)||(8411606-8411652)
chr1 (173-227)||(47214344-47214398)
chr1 (185-227)||(51286260-51286302)
chr1 (187-228)||(3024644-3024685)
chr1 (181-229)||(16987072-16987120)
chr1 (180-228)||(36779156-36779204)
chr1 (181-228)||(902774-902821)
chr1 (184-227)||(1790645-1790688)
chr1 (180-219)||(29586978-29587017)
chr1 (180-227)||(34008316-34008363)
chr1 (178-208)||(21486218-21486248)
chr1 (178-206)||(21093243-21093271)
[»] chr7 (17 HSPs)
chr7 (178-229)||(29162861-29162912)
chr7 (181-227)||(32815305-32815351)
chr7 (173-227)||(47078132-47078186)
chr7 (180-227)||(23048287-23048334)
chr7 (180-227)||(39231615-39231662)
chr7 (181-227)||(37808652-37808698)
chr7 (184-227)||(13163056-13163099)
chr7 (181-227)||(19785967-19786013)
chr7 (181-227)||(26041208-26041254)
chr7 (185-227)||(29002743-29002785)
chr7 (181-227)||(41026182-41026228)
chr7 (181-227)||(41666810-41666856)
chr7 (178-227)||(41402645-41402694)
chr7 (184-227)||(39137289-39137332)
chr7 (181-227)||(21023005-21023051)
chr7 (180-210)||(34757357-34757387)
chr7 (190-227)||(46148128-46148165)
[»] chr5 (14 HSPs)
chr5 (181-228)||(35098893-35098940)
chr5 (184-228)||(8267711-8267755)
chr5 (181-228)||(16437452-16437499)
chr5 (179-226)||(21064112-21064159)
chr5 (181-227)||(4430824-4430870)
chr5 (185-225)||(17402814-17402854)
chr5 (180-227)||(39088756-39088803)
chr5 (185-227)||(2224928-2224970)
chr5 (181-227)||(2688874-2688920)
chr5 (179-229)||(23126227-23126277)
chr5 (185-227)||(42267482-42267524)
chr5 (179-227)||(5042385-5042433)
chr5 (179-227)||(33620745-33620793)
chr5 (179-228)||(39628925-39628974)
[»] scaffold0471 (1 HSPs)
scaffold0471 (181-227)||(144-190)
[»] chr6 (11 HSPs)
chr6 (181-227)||(5327479-5327525)
chr6 (182-228)||(14986633-14986679)
chr6 (184-228)||(34504156-34504200)
chr6 (181-224)||(3610849-3610892)
chr6 (185-227)||(2075343-2075385)
chr6 (185-227)||(22341067-22341109)
chr6 (185-228)||(30036686-30036729)
chr6 (181-226)||(11547417-11547462)
chr6 (185-229)||(2777209-2777253)
chr6 (186-228)||(335197-335239)
chr6 (185-227)||(30152422-30152464)
[»] scaffold0449 (1 HSPs)
scaffold0449 (179-227)||(9340-9388)
[»] scaffold0687 (1 HSPs)
scaffold0687 (178-228)||(2334-2384)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 41569122 - 41569330
Alignment:
Q  6 acaaggatgaagttttttgtttattgcagtgcagcaatagccaataatatatgttgtaatttatgataatgatttattgagtccatatgcaaagtgttgt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||     |||||    
T  41569122 acaaggatgaagttttttgtttattgcagtgcagcaatagccaataatatatgttgtagtttatgataatgattttttgagtccatatgc-----gttgt 41569216  T
Q  106 caaatgagcaaaagatttaagattacttctttgacacgattattcgatgattgagtagtagatattgaattgaatgaggagtgttatttgaacaaccaat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||      || |||| |||||||||||||||||    
T  41569217 caaatgagcaaaagatttaagattacttctttgacacgattat---atgattgagtagtagatattgaaa-----gatgagtattatttgaacaaccaat 41569308  T
Q  206 ttggtaacaacttatttgacaa 227  Q
    ||| | | ||||||||||||||    
T  41569309 ttgatgataacttatttgacaa 41569330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 670360 - 670406
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||    
T  670360 gaggagtgttatttgaacaaccaatttgatgacaacttatttgacaa 670406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 17779565 - 17779519
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  17779565 gaggggtgttatttgaacaaccaatttggtgacaacttatttgacaa 17779519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 28679495 - 28679453
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  28679495 agtgttatttgaacaaccaatttggtcacaacttatttgacaa 28679453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 29051543 - 29051589
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||    
T  29051543 gaggagtgttatttgaacaaccaatttggtgataacttatttgacaa 29051589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 31389730 - 31389684
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||    
T  31389730 gaggagtgttatttgaacaaccaatttgatgacaacttatttgacaa 31389684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 7552740 - 7552693
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    |||||||||||||||||||| ||||||||| |||| ||||||||||||    
T  7552740 gaggagtgttatttgaacaatcaatttggtgacaatttatttgacaat 7552693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 18177120 - 18177077
Alignment:
Q  184 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  18177120 gagtgttatttgaacaatcaatttggtgacaacttatttgacaa 18177077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 434033 - 433987
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||| |||||| || ||||||||||||||||    
T  434033 gaggagtgttatttgaacaatcaattttgtgacaacttatttgacaa 433987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 2464137 - 2464184
Alignment:
Q  180 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||| ||||||||||||| | | ||||||||||||||    
T  2464137 tgaggagtgttatttaaacaaccaatttgatgaaaacttatttgacaa 2464184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 6941118 - 6941075
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    |||||||||||||||||||||||| | | |||||||||||||||    
T  6941118 agtgttatttgaacaaccaatttgatgataacttatttgacaat 6941075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 29684552 - 29684595
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    |||||||||||||||| ||||||| | |||||||||||||||||    
T  29684552 agtgttatttgaacaatcaatttgatgacaacttatttgacaat 29684595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 42223844 - 42223888
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaatt 229  Q
    |||||||||||||||||||||||||| | || |||||| ||||||    
T  42223844 agtgttatttgaacaaccaatttggtgataatttatttaacaatt 42223888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 13971303 - 13971257
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13971303 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 13971257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 1633778 - 1633824
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  1633778 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 1633824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 32843830 - 32843876
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  32843830 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 32843876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 36110321 - 36110275
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  36110321 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 36110275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 1871500 - 1871549
Alignment:
Q  178 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  1871500 aatgaggagtgttatttgaacaaccaatttgattacaacttatttgacaa 1871549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 7955894 - 7955941
Alignment:
Q  180 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  7955894 tgaggagtgttatttgaacaatcaatttggtgacaacttatttgacaa 7955941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 16966968 - 16966922
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||    
T  16966968 gaggagtgttatttgaacaaccaatttggtgaaaacttatttgacaa 16966922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 34591447 - 34591401
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  34591447 gaggagtgttatttgaacaatcaatttggtgacaacttatttgacaa 34591401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 7586048 - 7586097
Alignment:
Q  178 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||    
T  7586048 aatgaggagtgttatttgaacaaccaatttcatgacaacttatttgacaa 7586097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 30135902 - 30135943
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttattt 222  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  30135902 gaggagtgttatttgaacaaccaatttggtgacaacttattt 30135943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 37783860 - 37783905
Alignment:
Q  182 aggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  37783860 aggagtgttatttgatcaaccaatttggtgacaacttatttgacaa 37783905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 29867191 - 29867235
Alignment:
Q  184 gagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||    
T  29867191 gagtgttatatgaacaactaatttggtaacaacttatttgacaat 29867235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 33589119 - 33589166
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    ||||| |||||||||||||| ||||||||| |||||||||||||||||    
T  33589119 gaggattgttatttgaacaatcaatttggtgacaacttatttgacaat 33589166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 7593036 - 7592986
Alignment:
Q  178 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    ||||| ||||||||||||||||| |||| |||| |||||||||||||||||    
T  7593036 aatgatgagtgttatttgaacaatcaatatggtgacaacttatttgacaat 7592986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 11017988 - 11017942
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||||  |||||||| ||||||||||||||||    
T  11017988 gaggagtgttatttgaacaattaatttggtgacaacttatttgacaa 11017942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 18651539 - 18651497
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||| |||||||||||| |||||||||||||||||||    
T  18651539 agtgttatttaaacaaccaatttagtaacaacttatttgacaa 18651497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 32847574 - 32847620
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||| ||||||||| | ||||||||||||||    
T  32847574 gaggagtgttatttgaacaatcaatttggtgataacttatttgacaa 32847620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 11657895 - 11657936
Alignment:
Q  187 tgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  11657895 tgttatttgaacaaccaatttgctgacaacttatttgacaat 11657936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 6968119 - 6968159
Alignment:
Q  179 atgaggagtgttatttgaacaaccaatttggtaacaactta 219  Q
    |||||||||||||||||||||| ||||||||| ||||||||    
T  6968119 atgaggagtgttatttgaacaatcaatttggtgacaactta 6968159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 7478962 - 7478915
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    ||||||||||||||||||||| |||||| | ||||| |||||||||||    
T  7478962 gaggagtgttatttgaacaactaatttgttgacaacctatttgacaat 7478915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 35564468 - 35564426
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||| ||||| || ||||||||||||||||    
T  35564468 agtgttatttgaacaactaatttagtgacaacttatttgacaa 35564426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 9208248 - 9208219
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggt 210  Q
    ||||||||||||||||||||||||||||||    
T  9208248 gaggagtgttatttgaacaaccaatttggt 9208219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Complemental strand, 5864378 - 5864350
Alignment:
Q  179 atgaggagtgttatttgaacaaccaattt 207  Q
    |||||||||||||||||||||||||||||    
T  5864378 atgaggagtgttatttgaacaaccaattt 5864350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 14451579 - 14451530
Alignment:
Q  178 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14451579 aatgaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 14451530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 53152207 - 53152255
Alignment:
Q  179 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  53152207 atgaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 53152255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 37066170 - 37066123
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  37066170 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaat 37066123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 5932046 - 5932092
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  5932046 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 5932092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 9118752 - 9118798
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  9118752 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 9118798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 17476062 - 17476012
Alignment:
Q  178 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  17476062 aatgaggagtgttatttgaacaatcaatttggtgacaacttatttgacaat 17476012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 41486031 - 41486077
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  41486031 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 41486077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 47965920 - 47965874
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  47965920 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 47965874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 30080030 - 30079983
Alignment:
Q  180 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||    
T  30080030 tgaggagtgttatttgaacaaccaatttggtgaaaacttatttgacaa 30079983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 33899213 - 33899260
Alignment:
Q  180 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||    
T  33899213 tgagaagtgttatttgaacaaccaatttggtgacaacttatttgacaa 33899260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 50272960 - 50273007
Alignment:
Q  180 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||    
T  50272960 tgaggagtattatttgaacaaccaatttggtgacaacttatttgacaa 50273007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 12112810 - 12112764
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||    
T  12112810 gaggagtgatatttgaacaaccaatttggtgacaacttatttgacaa 12112764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 23822136 - 23822182
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  23822136 gaggggtgttatttgaacaaccaatttggtgacaacttatttgacaa 23822182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 51194452 - 51194406
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||    
T  51194452 gaggagtgttatttgaacaaccaatttgatgacaacttatttgacaa 51194406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 54669472 - 54669518
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||    
T  54669472 gaggagtgttatttgaacaaccaatttgatgacaacttatttgacaa 54669518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 21260483 - 21260434
Alignment:
Q  179 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  21260483 atgaggagtgttttttgaacaaccaatttggtgacaatttatttgacaat 21260434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 51746405 - 51746357
Alignment:
Q  179 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||||||  |||||||| ||||||||||||||||    
T  51746405 atgaggagtgttatttgaacaattaatttggtgacaacttatttgacaa 51746357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 2256219 - 2256266
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  2256219 gaggagtgttatttgaacaactaatttggtgacaacttattttacaat 2256266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 25317957 - 25318000
Alignment:
Q  184 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  25317957 gagtgttatttgaacaaccaatttggtgataacttatttgacaa 25318000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 26206868 - 26206911
Alignment:
Q  184 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  26206868 gagtgttatttgaacaactaatttggtgacaacttatttgacaa 26206911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 42959455 - 42959408
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||    
T  42959455 gaggagtgttatttgaacaaccaatttagtgataacttatttgacaat 42959408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 624203 - 624245
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||| |||||||| ||||||||||||||||    
T  624203 agtgttatttgaacaactaatttggtgacaacttatttgacaa 624245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 13389342 - 13389384
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||| ||||||||| ||||||||||||||||    
T  13389342 agtgttatttgaacaatcaatttggtcacaacttatttgacaa 13389384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 31076232 - 31076190
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||| ||||||||||||||| ||||||||||||||||    
T  31076232 agtgttatttaaacaaccaatttggtgacaacttatttgacaa 31076190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 41082497 - 41082452
Alignment:
Q  184 gagtgttatttgaacaaccaatttggtaacaacttatttgacaatt 229  Q
    ||||||||||||||||||||||||| |  |||||||||||||||||    
T  41082497 gagtgttatttgaacaaccaatttgatggcaacttatttgacaatt 41082452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 43326230 - 43326279
Alignment:
Q  180 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaatt 229  Q
    |||||||||||||||||| || ||||||||| | ||||||||||||||||    
T  43326230 tgaggagtgttatttgaataaacaatttggtgataacttatttgacaatt 43326279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 6141666 - 6141714
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaatt 229  Q
    ||||||||||||||||||||||||||| || || | |||||||||||||    
T  6141666 gaggagtgttatttgaacaaccaatttagtgactatttatttgacaatt 6141714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 35820354 - 35820308
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||||  |||||||| | ||||||||||||||    
T  35820354 gaggagtgttatttgaacaattaatttggtgataacttatttgacaa 35820308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 55601600 - 55601642
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||| |||||| || ||||||||||||||||    
T  55601600 agtgttatttgaacaatcaattttgtgacaacttatttgacaa 55601642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 40609798 - 40609769
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggt 210  Q
    ||||||||||||||||||||||||||||||    
T  40609798 gaggagtgttatttgaacaaccaatttggt 40609769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 6494535 - 6494567
Alignment:
Q  184 gagtgttatttgaacaaccaatttggtaacaac 216  Q
    ||||||||||||||||||||||||||| |||||    
T  6494535 gagtgttatttgaacaaccaatttggtgacaac 6494567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 41389759 - 41389807
Alignment:
Q  179 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||| ||||||||||||||||||||||| || || |||||||| ||||    
T  41389759 atgagaagtgttatttgaacaaccaatttcgtgactacttattttacaa 41389807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 54195529 - 54195477
Alignment:
Q  175 ttgaatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  54195529 ttgattgaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 54195477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 36122009 - 36121958
Alignment:
Q  176 tgaatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  36122009 tgaaagaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 36121958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 10206861 - 10206907
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  10206861 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 10206907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 39670985 - 39671031
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  39670985 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 39671031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 44677372 - 44677418
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  44677372 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 44677418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 37508384 - 37508432
Alignment:
Q  179 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||    
T  37508384 atgaggagtgttatttgaacaaccaatttgatgacaacttatttgacaa 37508432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 35201428 - 35201475
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||    
T  35201428 gaggagtgttatttgaacaatcaatttggtgacaacttatttgacaat 35201475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 22371377 - 22371327
Alignment:
Q  178 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  22371377 aatgaggagtgttatttgaacaactaatttggtgacaatttatttgacaat 22371327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 51973253 - 51973302
Alignment:
Q  178 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  51973253 aatgaggagtgttatttgaacaactaatttggtgacaatttatttgacaa 51973302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 26996500 - 26996452
Alignment:
Q  179 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  26996500 atgaggagtgttatttgaacaacaaatttggtgacaatttatttgacaa 26996452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 33376048 - 33376000
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaatt 229  Q
    |||||||||||||||||||| ||||||||| ||||||||||||| ||||    
T  33376048 gaggagtgttatttgaacaatcaatttggtgacaacttatttgaaaatt 33376000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 28419105 - 28419148
Alignment:
Q  184 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||||||||||| |||||||| |||||||    
T  28419105 gagtgttatttgaacaaccaatttggtgacaacttacttgacaa 28419148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 32767856 - 32767813
Alignment:
Q  184 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  32767856 gagtgttatttgaacaatcaatttggtgacaacttatttgacaa 32767813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 55013181 - 55013138
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  55013181 agtgttatttgaacaaccaatttggtgacaatttatttgacaat 55013138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 11633796 - 11633750
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| | || |||||||||||    
T  11633796 gaggagtgttatttgaacaaccaatttggtgataatttatttgacaa 11633750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 43905156 - 43905110
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||||||||||| || | ||||||||||||||    
T  43905156 gaggagtgttatttgaacaaccaatttagtgaaaacttatttgacaa 43905110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 54773641 - 54773687
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||| |||| |||||||||||| ||||||||||||||||    
T  54773641 gaggagtgttatatgaataaccaatttggtgacaacttatttgacaa 54773687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 390993 - 390945
Alignment:
Q  180 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    |||||| |||||||||||||||||| ||| | |||||||||||||||||    
T  390993 tgaggaatgttatttgaacaaccaagttgatgacaacttatttgacaat 390945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 30909204 - 30909165
Alignment:
Q  189 ttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  30909204 ttatttgaacaactaatttggtgacaacttatttgacaat 30909165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 46982794 - 46982837
Alignment:
Q  184 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||| |||||||| |||| |||||||||||    
T  46982794 gagtgttatttgaacaactaatttggtgacaatttatttgacaa 46982837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 21195779 - 21195825
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||| |||||||||||| ||||||| |||||| |||||||||||    
T  21195779 gaggagtattatttgaacaatcaatttgataacaatttatttgacaa 21195825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 29633960 - 29634006
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||| |||||||||||||||||||||| || |||| |||||||||||    
T  29633960 gaggggtgttatttgaacaaccaatttagtgacaatttatttgacaa 29634006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 30862965 - 30863007
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||| ||||||||| |||| |||||||||||    
T  30862965 agtgttatttgaacaatcaatttggtgacaatttatttgacaa 30863007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 49417753 - 49417711
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||||||| || ||||||||||| ||||    
T  49417753 agtgttatttgaacaaccaattttgtgacaacttatttaacaa 49417711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 54028128 - 54028079
Alignment:
Q  178 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||| || |||||| || |||||||||| |||||    
T  54028128 aatgaggagtgttatttgaagaatcaatttagtgacaacttattggacaa 54028079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 20565004 - 20565052
Alignment:
Q  179 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20565004 atgaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 20565052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 26837635 - 26837589
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  26837635 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 26837589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 3603297 - 3603248
Alignment:
Q  178 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  3603297 aatgaggagtgttatttgaacaaccaatttgatgacaacttatttgacaa 3603248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 26585765 - 26585813
Alignment:
Q  179 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||    
T  26585765 atgaggagtgttatttgaacaaccaatttgatgacaacttatttgacaa 26585813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 36494630 - 36494587
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  36494630 agtgttatttgaacaaccaatttggtgacaacttatttgacaat 36494587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 51191972 - 51191925
Alignment:
Q  180 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  51191972 tgaggggtgttatttgaacaaccaatttggtgacaacttatttgacaa 51191925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 7128301 - 7128255
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  7128301 gaggagtgttatttgaacaatcaatttggtgacaacttatttgacaa 7128255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 9008408 - 9008362
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  9008408 gaggagtgttatttgaacaatcaatttggtgacaacttatttgacaa 9008362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 21340704 - 21340658
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  21340704 gaggagtgttatttgaacaatcaatttggtgacaacttatttgacaa 21340658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 37178890 - 37178841
Alignment:
Q  178 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  37178890 aatgaggagttttatttgaacaatcaatttggtgacaacttatttgacaa 37178841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 757033 - 756993
Alignment:
Q  187 tgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  757033 tgttatttgaacaaccaatttggtgacaacttatttgacaa 756993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 33024462 - 33024505
Alignment:
Q  184 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  33024462 gagtgttatttgaacaatcaatttggtgacaacttatttgacaa 33024505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 38303579 - 38303622
Alignment:
Q  184 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  38303579 gagtgttatttgaacaaccaatttggtgataacttatttgacaa 38303622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 1852839 - 1852885
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||| |||||||||| | ||||||||||||||||    
T  1852839 gaggagtgttatttgaataaccaatttgatgacaacttatttgacaa 1852885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 4514342 - 4514388
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||| |||||| || ||||||||||||||||    
T  4514342 gaggagtgttatttgaacaatcaatttagtgacaacttatttgacaa 4514388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 8411606 - 8411652
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||| ||||||||||||||||||||||||| ||||||||||| ||||    
T  8411606 gaggtgtgttatttgaacaaccaatttggtgacaacttatttaacaa 8411652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 47214398 - 47214344
Alignment:
Q  173 aattgaatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||| |||  |||||||||||||||||||||| || ||||||||||||||||    
T  47214398 aattgaaagagtggtgttatttgaacaaccaattttgtgacaacttatttgacaa 47214344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 51286260 - 51286302
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||||||| || ||||||||||||||||    
T  51286260 agtgttatttgaacaaccaattttgtgacaacttatttgacaa 51286302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 3024644 - 3024685
Alignment:
Q  187 tgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    ||||||||||||||| |||||||| |||||||||||||||||    
T  3024644 tgttatttgaacaactaatttggtgacaacttatttgacaat 3024685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 16987120 - 16987072
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaatt 229  Q
    ||||||||||||||||| ||  |||||||| ||||||||||||||||||    
T  16987120 gaggagtgttatttgaagaattaatttggtgacaacttatttgacaatt 16987072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 36779156 - 36779204
Alignment:
Q  180 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    ||||||||||||||||||||| ||||||||| | || ||||||||||||    
T  36779156 tgaggagtgttatttgaacaatcaatttggtgataatttatttgacaat 36779204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 902821 - 902774
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    |||||||||||||||||||||||||||| | | | |||||||||||||    
T  902821 gaggagtgttatttgaacaaccaatttgatgatagcttatttgacaat 902774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 1790688 - 1790645
Alignment:
Q  184 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||| ||| |||||||| ||||||||||||||||    
T  1790688 gagtgttatttgaataactaatttggtgacaacttatttgacaa 1790645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 29587017 - 29586978
Alignment:
Q  180 tgaggagtgttatttgaacaaccaatttggtaacaactta 219  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  29587017 tgaggagtgctatttgaacaaccaatttggtgacaactta 29586978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 34008363 - 34008316
Alignment:
Q  180 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||| |||||||||||||||| |||||| || ||||||||||||||||    
T  34008363 tgagtagtgttatttgaacaatcaattttgtgacaacttatttgacaa 34008316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 208
Target Start/End: Original strand, 21486218 - 21486248
Alignment:
Q  178 aatgaggagtgttatttgaacaaccaatttg 208  Q
    |||||||||||||||||||||||||||||||    
T  21486218 aatgaggagtgttatttgaacaaccaatttg 21486248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Original strand, 21093243 - 21093271
Alignment:
Q  178 aatgaggagtgttatttgaacaaccaatt 206  Q
    |||||||||||||||||||||||||||||    
T  21093243 aatgaggagtgttatttgaacaaccaatt 21093271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 29162861 - 29162912
Alignment:
Q  178 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaatt 229  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  29162861 aatgatgagtgttatttgaacaaccaatttggtgacaacttatttgacaatt 29162912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 32815351 - 32815305
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  32815351 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 32815305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 47078132 - 47078186
Alignment:
Q  173 aattgaatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||    
T  47078132 aattgaaagagtagtgttatttgaacaaccaattttgtaacaacttatttgacaa 47078186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 23048287 - 23048334
Alignment:
Q  180 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  23048287 tgaggagtgttatttgaacaaccaatttggtgacaacttattttacaa 23048334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 39231615 - 39231662
Alignment:
Q  180 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||    
T  39231615 tgaggagtgttatttgaacaactaatttggtgacaacttatttgacaa 39231662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 37808652 - 37808698
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  37808652 gaggagtgttatttgaacaaccaatttggtgacaacgtatttgacaa 37808698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 13163099 - 13163056
Alignment:
Q  184 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  13163099 gagtgttatttgaacaatcaatttggtgacaacttatttgacaa 13163056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 19785967 - 19786013
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||    
T  19785967 gaggagtgttatttgaacaatcaatttgatgacaacttatttgacaa 19786013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 26041208 - 26041254
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  26041208 gaggagtattatttgaacaatcaatttggtgacaacttatttgacaa 26041254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 29002785 - 29002743
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||| ||| ||||||||||||    
T  29002785 agtgttatttgaacaaccaatttggtgacagcttatttgacaa 29002743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 41026228 - 41026182
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||    
T  41026228 gaggagtgttatttgaacaactaatttggtgacaatttatttgacaa 41026182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 41666810 - 41666856
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| | || |||||||||||    
T  41666810 gaggagtgttatttgaacaaccaatttggtgataatttatttgacaa 41666856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 41402694 - 41402645
Alignment:
Q  178 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||| ||||    
T  41402694 aatgagaagtgttatttgaacaactaatttggtgacaacttatttaacaa 41402645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 39137332 - 39137289
Alignment:
Q  184 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||||||||| | | ||||||||||||||    
T  39137332 gagtgttatttgaacaaccaatttgatgataacttatttgacaa 39137289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 21023005 - 21023051
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||| ||||||| | |||| |||||||||||    
T  21023005 gaggagtgttatttgaacaatcaatttgatgacaatttatttgacaa 21023051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 210
Target Start/End: Original strand, 34757357 - 34757387
Alignment:
Q  180 tgaggagtgttatttgaacaaccaatttggt 210  Q
    |||||||||||||||||||||||||||||||    
T  34757357 tgaggagtgttatttgaacaaccaatttggt 34757387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 46148165 - 46148128
Alignment:
Q  190 tatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  46148165 tatttgaacaaccaatttgatgacaacttatttgacaa 46148128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 35098893 - 35098940
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  35098893 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaat 35098940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 8267711 - 8267755
Alignment:
Q  184 gagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  8267711 gagtgttatttgaacaaccaatttggtgacaacttatttgacaat 8267755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 16437452 - 16437499
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||    
T  16437452 gaggagtgttatttgaacaaccaatttggtgacaatttatttgacaat 16437499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 21064112 - 21064159
Alignment:
Q  179 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgaca 226  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||    
T  21064112 atgaggagtgttatttgaacaatcaatttggtgacaacttatttgaca 21064159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 4430824 - 4430870
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||    
T  4430824 gaggagtgctatttgaacaaccaatttggtgacaacttatttgacaa 4430870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 17402814 - 17402854
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgac 225  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  17402814 agtgttatttgaacaaccaatttggtgacaacttatttgac 17402854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 39088756 - 39088803
Alignment:
Q  180 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||| ||||||||||||||||||||||| || ||||||||||||||||    
T  39088756 tgagtagtgttatttgaacaaccaatttagtgacaacttatttgacaa 39088803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 2224970 - 2224928
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  2224970 agtgttatttgaacaaccaatttgatgacaacttatttgacaa 2224928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 2688874 - 2688920
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||| |||||||||||||||||||||||| |||| |||||||||||    
T  2688874 gaggattgttatttgaacaaccaatttggtgacaaattatttgacaa 2688920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 23126227 - 23126277
Alignment:
Q  179 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaatt 229  Q
    |||| |||||||||||||||||| |||||| | ||||||||||||||||||    
T  23126227 atgatgagtgttatttgaacaactaatttgatgacaacttatttgacaatt 23126277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 42267524 - 42267482
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  42267524 agtgttatttgaacaaccaatttgatgacaacttatttgacaa 42267482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 5042433 - 5042385
Alignment:
Q  179 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||| |||||||||||||||| ||||||||| | ||||||||||||||    
T  5042433 atgagaagtgttatttgaacaatcaatttggtgataacttatttgacaa 5042385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 33620793 - 33620745
Alignment:
Q  179 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    ||||||| ||||||||||||||||||||| || ||||||||||| ||||    
T  33620793 atgaggaatgttatttgaacaaccaatttagtgacaacttatttaacaa 33620745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 39628974 - 39628925
Alignment:
Q  179 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    ||||||||||||||||||||||  ||||| || |||| ||||||||||||    
T  39628974 atgaggagtgttatttgaacaaataattttgtgacaatttatttgacaat 39628925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 190 - 144
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  190 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 5327479 - 5327525
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  5327479 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 5327525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 14986633 - 14986679
Alignment:
Q  182 aggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  14986633 aggagtgttatttgaacaaccaatttggtgacaacttatttgacaat 14986679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 34504200 - 34504156
Alignment:
Q  184 gagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  34504200 gagtgttatttgaacaaccaatttggtgacaacttatttgacaat 34504156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 3610849 - 3610892
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttga 224  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  3610849 gaggagtgttatttgaacaaccaatttggtgacaacttatttga 3610892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 2075343 - 2075385
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  2075343 agtgttatttgaacaaccaatttggtgacaacttatttgacaa 2075385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 22341067 - 22341109
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  22341067 agtgttatttgaacaaccaatttggtgacaacttatttgacaa 22341109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 30036686 - 30036729
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    |||||||||||||||| ||||||||| |||||||||||||||||    
T  30036686 agtgttatttgaacaatcaatttggtgacaacttatttgacaat 30036729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 11547417 - 11547462
Alignment:
Q  181 gaggagtgttatttgaacaaccaatttggtaacaacttatttgaca 226  Q
    |||||||||||||||||||| ||||||||| |||| ||||||||||    
T  11547417 gaggagtgttatttgaacaatcaatttggtgacaatttatttgaca 11547462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 2777209 - 2777253
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaatt 229  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||    
T  2777209 agtgttatttgaacaatcaatttggtgataacttatttgacaatt 2777253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 335239 - 335197
Alignment:
Q  186 gtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    ||||||||||||||| |||||| || |||||||||||||||||    
T  335239 gtgttatttgaacaatcaatttagtgacaacttatttgacaat 335197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 30152422 - 30152464
Alignment:
Q  185 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||||||||||||||| ||||||||| | ||||||||||||||    
T  30152422 agtgttatttgaacaatcaatttggtgataacttatttgacaa 30152464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 9388 - 9340
Alignment:
Q  179 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 227  Q
    |||| ||||||||||||||||||||||||| | ||||||||||||||||    
T  9388 atgaagagtgttatttgaacaaccaatttgatcacaacttatttgacaa 9340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 2384 - 2334
Alignment:
Q  178 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 228  Q
    ||||| ||||||||||||||||| |||| |||| |||||||||||||||||    
T  2384 aatgatgagtgttatttgaacaatcaatatggtgacaacttatttgacaat 2334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University