View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_287 (Length: 229)
Name: NF6868A_low_287
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_287 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 14722044 - 14721991
Alignment:
| Q |
176 |
tgtaaagtgatgttcatagatggtcaaatttagtggggttagcaaaaatgttga |
229 |
Q |
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| T |
14722044 |
tgtaaagtgatgttcatagatggtcaaatttagtggggttagcaaaaatgttga |
14721991 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 39465207 - 39465259
Alignment:
| Q |
176 |
tgtaaagtgatgttcatagatggtcaaatttagtggggttagcaaaaatgttg |
228 |
Q |
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|||||||| ||||||||| ||||||| ||||||||| |||||||||||||||| |
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| T |
39465207 |
tgtaaagtaatgttcatatatggtcagatttagtggagttagcaaaaatgttg |
39465259 |
T |
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