View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_292 (Length: 229)
Name: NF6868A_low_292
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_292 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 77 - 226
Target Start/End: Complemental strand, 20193886 - 20193737
Alignment:
| Q |
77 |
tttctgcgacaaatgctttgattccacatgttcaggcacaagcccaacctcccatatcatcacctcagcaaaatagttcccaggcgcaaccacaaaattc |
176 |
Q |
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| T |
20193886 |
tttctgcgacaaatgctttgattccacatgttcaggcacaagcccaacctcccatatcatcacctcagcaaaatagttcccaggcgcaaccacaaaattc |
20193787 |
T |
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| Q |
177 |
atctcagcaagtatctgtttcccctgcaacaccatcatctcctttgactc |
226 |
Q |
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| T |
20193786 |
atctcagcaagtatctgtttcccctgcaacaccatcatctcctttgactc |
20193737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 20193959 - 20193928
Alignment:
| Q |
1 |
gcctatatccgattggcaaaggaaaggcaact |
32 |
Q |
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| T |
20193959 |
gcctatatccgattggcaaaggaaaggcaact |
20193928 |
T |
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