View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_297 (Length: 229)
Name: NF6868A_low_297
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_297 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30287131 - 30286909
Alignment:
| Q |
1 |
ttgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287131 |
ttgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaat |
30287032 |
T |
|
| Q |
101 |
gttaacatgtcattnnnnnnnnnnnnttactaacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagag |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287031 |
gttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagag |
30286932 |
T |
|
| Q |
201 |
actgagtgagaatacagtatacc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
30286931 |
actgagtgagaatacagtatacc |
30286909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30292165 - 30291943
Alignment:
| Q |
1 |
ttgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30292165 |
ttgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaat |
30292066 |
T |
|
| Q |
101 |
gttaacatgtcattnnnnnnnnnnnnttactaacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagag |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30292065 |
gttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagag |
30291966 |
T |
|
| Q |
201 |
actgagtgagaatacagtatacc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
30291965 |
actgagtgagaatacagtatacc |
30291943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30304799 - 30304577
Alignment:
| Q |
1 |
ttgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30304799 |
ttgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaat |
30304700 |
T |
|
| Q |
101 |
gttaacatgtcattnnnnnnnnnnnnttactaacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagag |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30304699 |
gttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagag |
30304600 |
T |
|
| Q |
201 |
actgagtgagaatacagtatacc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
30304599 |
actgagtgagaatacagtatacc |
30304577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 68 - 221
Target Start/End: Complemental strand, 30315651 - 30315494
Alignment:
| Q |
68 |
ttcaattaagtagaagcaaatcttttaattaatgttaacatgtcattnnnnnnnnnnnnttactaacatatgctacattcaatttaatttaattttggta |
167 |
Q |
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||||||||||||||| ||||| |||||| |||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||||||| |
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| T |
30315651 |
ttcaattaagtagaaccaaatattttaaataatgttaacatgtcattaaaaataaaaaataactaatataggctacattcaatttaatttaattttggta |
30315552 |
T |
|
| Q |
168 |
ggaaactattgtaattaggccataca----gaaagagactgagtgagaatacagtata |
221 |
Q |
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| |||||||||||||||||||||||| ||||||||| ||||||||||| |||||| |
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| T |
30315551 |
gaaaactattgtaattaggccatacagaaggaaagagaccgagtgagaatatagtata |
30315494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 30300007 - 30299930
Alignment:
| Q |
1 |
ttgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatcttaattagctttttcttattcaattaagta |
79 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| |||| || ||||| ||||||| |
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| T |
30300007 |
ttgtcttcctcaccttcaaatttgaaatcacacaaaaa-taaacatatcttaattagattttactcattcatttaagta |
30299930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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