View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6868A_low_3 (Length: 651)
Name: NF6868A_low_3
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Complemental strand, 37704969 - 37704454
Alignment:
| Q |
1 |
gttatgaaaaatacttacataactaacttgttttttgagcaactacataactaacttgttataattaaataacttaaatgacgtaagtgatacgnnnnnn |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
37704969 |
gttacgaaaaatacttacataactaacttgttttttgagcaactacataactaacttgttataattaaataacttaaatgacgcaagtgatacgaaaaaa |
37704870 |
T |
|
| Q |
101 |
nnnnnnnnnnccgatttgttataattaaataacttaaaagtatcgtaatttgctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37704869 |
tcttaaaaaaccgatttgttataattaaataacttaaaagtctcgtaatttgctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaa |
37704770 |
T |
|
| Q |
201 |
tacaattaatgttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttatcacaacttgaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37704769 |
tacaattaatgttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttatcacaacttgaaa |
37704670 |
T |
|
| Q |
301 |
taagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37704669 |
taagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaa |
37704570 |
T |
|
| Q |
401 |
ttaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaata |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37704569 |
ttaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaata |
37704470 |
T |
|
| Q |
501 |
agtcaacctttttggt |
516 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37704469 |
agtcaacctttttggt |
37704454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 152 - 515
Target Start/End: Complemental strand, 37699349 - 37698974
Alignment:
| Q |
152 |
gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtatttttaagcac |
245 |
Q |
| |
|
|||||||||||| ||| || ||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
37699349 |
gctctttaaagtctgttcagttgaagaagtctaagtctccgttgctaaatacaattaatgttgttattattttcttcattttaggtgtatttttaagcaa |
37699250 |
T |
|
| Q |
246 |
attactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-g |
341 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||||||| | |
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|
| T |
37699249 |
attactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtcttg |
37699150 |
T |
|
| Q |
342 |
gtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatga |
441 |
Q |
| |
|
|| ||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
37699149 |
gttttccaagatgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtcatatcagtatacggttatga |
37699050 |
T |
|
| Q |
442 |
aaagcacccccaaaacaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg |
515 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||| |||| |||||||| |
|
|
| T |
37699049 |
aaagcacccccaacacaaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg |
37698974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 212 - 516
Target Start/End: Complemental strand, 37437823 - 37437520
Alignment:
| Q |
212 |
ttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
37437823 |
ttattttcttcatttcaggtgtatttttaagcaaattactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattc |
37437724 |
T |
|
| Q |
309 |
caactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatat |
407 |
Q |
| |
|
|||||| ||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
37437723 |
caactt----gctaattacgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatat |
37437628 |
T |
|
| Q |
408 |
tgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaac |
507 |
Q |
| |
|
||||||||| |||||||||| |||| | |||||||||||| ||||| | |||| ||||||||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
37437627 |
tgttgccaattgtcatatcactatacggttatgaaaagca-ccccacattaaaacaagggaatagctagactgaatttgtaaacaatctaataagtcaga |
37437529 |
T |
|
| Q |
508 |
ctttttggt |
516 |
Q |
| |
|
||||||||| |
|
|
| T |
37437528 |
ctttttggt |
37437520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 268 - 516
Target Start/End: Complemental strand, 37698864 - 37698636
Alignment:
| Q |
268 |
taaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgc----taattacgttcaaaaagtc-tggtcttcgaagatattatttag |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |||||||| |||||||| ||||| |||||||| |
|
|
| T |
37698864 |
taaatgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttag |
37698765 |
T |
|
| Q |
363 |
tttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaat |
462 |
Q |
| |
|
||||| ||||||||||||||| |||||| | |||||||||||||||| |||||||||| |||| | | |||||||| |
|
|
| T |
37698764 |
tttaacgaacaccaaacttttgtatgattg--------ttaatattgttgccaattgtcatatcactatacggt-----------------caacaaaat |
37698690 |
T |
|
| Q |
463 |
aagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
516 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
37698689 |
aagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggt |
37698636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 30384298 - 30384256
Alignment:
| Q |
52 |
taacttgttataattaaataacttaaatgacgtaagtgatacg |
94 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||| ||||| |
|
|
| T |
30384298 |
taacttgttacaattaaataacttaaaagacgtaagtaatacg |
30384256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 1630012 - 1630048
Alignment:
| Q |
57 |
tgttataattaaataacttaaatgacgtaagtgatac |
93 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
1630012 |
tgttatgattaaataacttaaaagacgtaagtgatac |
1630048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 3e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 152 - 388
Target Start/End: Original strand, 16840857 - 16841109
Alignment:
| Q |
152 |
gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtat----ttttaa |
241 |
Q |
| |
|
||||||||||||||| | | |||| |||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
16840857 |
gctctttaaagtatggatagttgacgaagtctaagtctccgcttctaaatacatttaatgttgttattattttcttcatttcaggtgtatatatttttaa |
16840956 |
T |
|
| Q |
242 |
gcacattactcactgtgattgctacttaaatgaatttgttatcttat------cacaacttgaaataagattccaactttcgtgctaattacgttcaaaa |
335 |
Q |
| |
|
||| |||| ||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16840957 |
gcaaattattcattgtgattggtacttaaatgaatttgttatcttattaatatcacaacttgcaataagattccaactta-gtgctaattacgttcaaaa |
16841055 |
T |
|
| Q |
336 |
agtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatg |
388 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||| | |||||||||||||| |||| |
|
|
| T |
16841056 |
agtcttggtcttccaagattttatttagtttattaaacaccaaacttttgtatg |
16841109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 31095132 - 31095092
Alignment:
| Q |
52 |
taacttgttataattaaataacttaaatgacgtaagtgata |
92 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31095132 |
taacttgttataattaaataacttaaaggacgtaagtgata |
31095092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 17411131 - 17411089
Alignment:
| Q |
50 |
actaacttgttataattaaataacttaaatgacgtaagtgata |
92 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17411131 |
actaacttgttacaattaaataacttaaatgacgtaagtgata |
17411089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 196244 - 196287
Alignment:
| Q |
50 |
actaacttgttataattaaataacttaaatgacgtaagtgatac |
93 |
Q |
| |
|
||||| || ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
196244 |
actaaattattacaattaaataacttaaatgacgtaagtgatac |
196287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 18080645 - 18080600
Alignment:
| Q |
47 |
ataactaacttgttataattaaataacttaaatgacgtaagtgata |
92 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
18080645 |
ataactaacttattacaattaaataacttaaatgacgtaagtgata |
18080600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 44291420 - 44291463
Alignment:
| Q |
50 |
actaacttgttataattaaataacttaaatgacgtaagtgatac |
93 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| |||||||||| |
|
|
| T |
44291420 |
actaacttgttacaattaaataacttaaaggacataagtgatac |
44291463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 12422352 - 12422390
Alignment:
| Q |
55 |
cttgttataattaaataacttaaatgacgtaagtgatac |
93 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
12422352 |
cttgttaaaattaaataacttaaaagacgtaagtgatac |
12422390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 32857837 - 32857805
Alignment:
| Q |
50 |
actaacttgttataattaaataacttaaatgac |
82 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
32857837 |
actaacttgttacaattaaataacttaaatgac |
32857805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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