View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_301 (Length: 229)
Name: NF6868A_low_301
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_301 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 41785987 - 41786193
Alignment:
| Q |
20 |
aagaaagtggggaaaatggaaaagaatctgaaagaaaaggatgaggatttggatagccttggggagaagaagagggaagcaataagacagctttgtttgg |
119 |
Q |
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| T |
41785987 |
aagaaagtggggaaaatggaaaagaatctgaaagaaaaggatgaggatttggatagccttggggagaagaagagggaagcaataagacagctttgtttgg |
41786086 |
T |
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| Q |
120 |
ttgttgagtttcatcgcgaccggtgtaactatctaatgaatttggtcgcaagtatgagagttaataagaagacatgaactttcttttttctgcatattct |
219 |
Q |
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| T |
41786087 |
ttgttgagtttcatcgcgaccggtgtaactatctaatgaatttggtcacaagtatgagagttaataagaagacatgaactttcttttttctgcttattat |
41786186 |
T |
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| Q |
220 |
tggacat |
226 |
Q |
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|| |||| |
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| T |
41786187 |
tgtacat |
41786193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 2281320 - 2281207
Alignment:
| Q |
22 |
gaaagtggggaaaatggaaaagaatctgaaagaaaaggatgaggatttggatagccttggggagaagaagagggaagcaataagacagctttgtttggtt |
121 |
Q |
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|||| |||||||| |||||||||| |||||| | |||||||| || ||| |||||||| ||||| |||| |||||||||||| ||||||||||| | |
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| T |
2281320 |
gaaaatggggaaattggaaaagaaactgaaacagaaggatgatgaactggctagccttgcagagaacaagaaggaagcaataaggcagctttgttttttg |
2281221 |
T |
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| Q |
122 |
gttgagtttcatcg |
135 |
Q |
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| T |
2281220 |
gttgactttcatcg |
2281207 |
T |
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