View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_302 (Length: 229)

Name: NF6868A_low_302
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_302
NF6868A_low_302
[»] chr6 (5 HSPs)
chr6 (7-229)||(341202-341424)
chr6 (7-227)||(332912-333132)
chr6 (7-226)||(337167-337386)
chr6 (90-227)||(347412-347549)
chr6 (105-227)||(356086-356208)


Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 341424 - 341202
Alignment:
Q  7 catcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagcaatacacgaaaagaggaattgatcaaatacctt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  341424 catcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagcaatacacgaaaagaggaattgatcaaatacctt 341325  T
Q  107 gcatgcctctgtcattttcttctcttctccgatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactcttcc 206  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  341324 gcatgcctcagtcattttcttctcttctccgatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactcttcc 341225  T
Q  207 gcttggttaaaagccttctcaga 229  Q
    |||||||||||||||||||||||    
T  341224 gcttggttaaaagccttctcaga 341202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 333132 - 332912
Alignment:
Q  7 catcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagcaatacacgaaaagaggaattgatcaaatacctt 106  Q
    |||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||    
T  333132 catcgtcactttcaacattgatttcatttttgttacaattttgctttagctcttcgcgctttgaagctatacacgaaaataggaatttatcaaatacttt 333033  T
Q  107 gcatgcctctgtcattttcttctcttctccgatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactcttcc 206  Q
    ||||||||| |||||||| |||||||| || |||||||||||  |||||| |||| |||||||||  |||||| ||||||||||||||||| | |||||     
T  333032 gcatgcctcggtcatttttttctcttccccaatttgaagccatttttgcatcttctaaacacaaacgggcacgatgtgtctatagaagatgcattcttca 332933  T
Q  207 gcttggttaaaagccttctca 227  Q
    |||||||||||||||||||||    
T  332932 gcttggttaaaagccttctca 332912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 337386 - 337167
Alignment:
Q  7 catcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagcaatacacgaaaagaggaattgatcaaatacctt 106  Q
    |||||| ||||| | |||| ||||||||||||||||  |||||||||||||||||||  |||||||| ||||||||| | ||||||||||||||||| ||    
T  337386 catcattactttgaccattaatttcatttttgttaccgtttttctttagctcttcgcattttgaagctatacacgaatataggaattgatcaaatacttt 337287  T
Q  107 gcatgcctctgtcattttcttctcttctccgatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactcttcc 206  Q
    |||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||  |||||| |||||||| ||||||||||| |||||     
T  337286 gcatgcttcagtcatttttttctcttcaccgatttgaagccaactttgcaacttccaaacacaagccggcacagtgtgtctgtagaagatggattcttca 337187  T
Q  207 gcttggttaaaagccttctc 226  Q
    ||||||||||||||||||||    
T  337186 gcttggttaaaagccttctc 337167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 347412 - 347549
Alignment:
Q  90 aattgatcaaataccttgcatgcctctgtcattttcttctcttctccgatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctat 189  Q
    |||||||||||||| |||||||| |  |||||||| |||||||| || |||||||||||  ||||||||||||||||||   | |||||  | |||||||    
T  347412 aattgatcaaatactttgcatgctttggtcatttttttctcttcaccaatttgaagccatttttgcaacttccaaacacttttaggcactatatgtctat 347511  T
Q  190 agaagatggactcttccgcttggttaaaagccttctca 227  Q
    |||| ||| |||||||   |||||||||||| ||||||    
T  347512 agaatatgcactcttcaatttggttaaaagctttctca 347549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 356086 - 356208
Alignment:
Q  105 ttgcatgcctctgtcattttcttctcttctccgatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactctt 204  Q
    ||||||||||  ||||| || |||||||| || |||||||||||  ||||||||||||||||||   | |||||  | ||||||||||| |||  |||||    
T  356086 ttgcatgccttggtcatatttttctcttcaccaatttgaagccatttttgcaacttccaaacacttttaggcactttatgtctatagaatatgccctctt 356185  T
Q  205 ccgcttggttaaaagccttctca 227  Q
    |   |||||| ||||||||||||    
T  356186 cgatttggttgaaagccttctca 356208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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